Tgen050317.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- Gzf1
- Assembly
- GCA_902155825.1
- Location
- CABFWO010008298.1:7098-12546[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.7 7e+02 3.0 0.0 5 14 8 17 7 20 0.85 2 22 0.18 34 7.1 0.3 2 23 63 84 62 84 0.96 3 22 5.7e-06 0.0011 21.3 0.7 1 23 94 116 94 116 0.98 4 22 1.3e-05 0.0024 20.2 1.6 1 23 122 145 122 145 0.97 5 22 0.18 33 7.2 1.9 1 23 152 174 152 174 0.96 6 22 2.4e-05 0.0045 19.3 1.5 1 23 180 203 180 203 0.98 7 22 9.7e-05 0.018 17.4 0.9 1 23 208 230 208 230 0.98 8 22 1.4e-05 0.0026 20.1 3.8 1 23 238 260 238 260 0.97 9 22 3.6e-07 6.8e-05 25.1 0.4 1 23 266 288 266 288 0.98 10 22 1.9e-06 0.00036 22.8 0.8 1 23 294 316 294 316 0.98 11 22 8.1e-07 0.00015 24.0 0.9 1 22 322 343 322 343 0.97 12 22 0.001 0.2 14.2 1.1 1 23 397 420 397 420 0.95 13 22 1.3e-05 0.0025 20.1 1.1 1 23 423 445 423 445 0.98 14 22 4.8e-05 0.0089 18.4 2.6 1 23 451 473 451 473 0.98 15 22 0.53 99 5.7 3.9 1 23 479 501 479 501 0.97 16 22 0.016 3 10.4 2.7 1 23 507 530 507 530 0.96 17 22 8.7e-05 0.016 17.6 0.5 1 23 535 557 535 557 0.98 18 22 3.2e-06 0.0006 22.1 0.6 1 23 567 589 567 589 0.97 19 22 0.00051 0.096 15.1 5.0 1 23 595 617 595 617 0.98 20 22 7.8e-07 0.00014 24.0 0.6 2 23 624 645 624 645 0.97 21 22 2.5e-05 0.0047 19.3 4.3 1 23 651 673 651 673 0.97 22 22 2.8e-06 0.00052 22.3 0.8 1 23 679 701 679 701 0.98
Sequence Information
- Coding Sequence
- ATGACTACAAGgGAACAAAATACATGTGGCCTAACATTCTCAAGAAATTCTCCACTGGGCTCTGATGGTGAGACAATTGTGCCGCTGGAATGGCAGGCTCGGATTATTTCACAGaataacacattaaataataacaaaaccgATGGCGGTGACTTGGCGCTACCCTCGGATCTCTTACAGAAGAACAAGTGTCAACTGTGCAGACAAACATTCCTTCTCGAGTCGGAGTTGACGGCTCACATCCTTGACCACGCGAAGGATCCTGAAATGAGTCCTGGCTACCCCTGCCCTACATGCGGCCAAGTTTTTCCAAAACGCTTCTTAATGAAACGTCACTTGCGACGTCACGATGACGTCTGGCAGTACAAGTGCGACATCTGTTCCAAGTTCTACAagtcaaaatatagtttggacGCGCACATGAAGTGGTCGCACTCGGGTGAGACAAAGAACCACTCGTGCTCGGTGTGCGGCTACAAAGCCTACCACCTATCTGCGATAAGGCAGCACGAGAAGATACACACAGGCGTGTTTGATTACACTTGTGGAGATTGCGGTAGAGGATTCCACACAAAGACCATGTTGAAGTCGCACAGGATAACCGCTCATGACGATGAACCTTTCAAGTGCAATTACTGCGGTAAAATCTACCGTTCCAAGGCAAACCGTGACGAGCATGTGAAAATCCACGACCCGGACTATGTCCACGTTCACCAGTGTGAACTGTGCGGGAAGACATTTCACACCAAACCAGAGTTGAAGAAGCATCTGGCGAGGCACAGAGGCGACGAGAAGTACGTCTGTGAGGAATGCGGCAAACCGTTCAAGTCTAAGACCACGCTTGTCAACCATACGCGCATACACAGCGGGGATAAACCTTACGTCTGCATGCTTTGCGGGAAAGCCTTCACCACTTCCTTTTTCCTTAAAACGCACATTCGCATTCATACTGGAGAGAAGCCGTTCTCGTGTGAAATTTGTTCCAAGTCGTTTTCTCAGAAATCTTCCTTGACTGTGCATACCCGGACAGCCGGCATAATCCTTAATTCACATCAAGACTTGCGTGGTACAAACTTGGCGTGGATGCCAGATCTTGGTTCGACGTGGTCGCTAGAGCCGGCCTCTTCTGTAGTGACACAAACCCGCAAGGCGGACACTAAACCAGTGGTGCCGAATGACAGGGGGCAGTTTGCGTGCCAGTGGTGTGACAAACAATGCATGAATGAATACATGCTGAGGCGCCACATCAAAGGCGCCCACACCACATACAAATGCCAGCTGTGCGGCAAGGAGTACCCCCAACGCCGCATGTTGACGCGTCACGCCAAGAGTCACACTGAACTCAGACCTTTTTCCTGCGAGATCTGCGCCAGAAAGTTCAAGCAGATGTTTGAGTTAAGGAAGCACCAGAAAACTCACACGGGTAACAAGACTTTCGCCTGCCACATCTGCGACTTTTCTGCGTATTACAAGTGTGTCTTGAGGGAGCACGTGAAGAAACACAGCAGAGACTTTGGTTATCACTGCGAGGAGTGCGACAAAGGTTTTCACACCCCTCAGCAGGTGGACTCGCACAAGATAACCTACCACGGGGCCCAACCTTTCCAGTGCAACGTGTGCGGTAAAACCTACGCCGTGAAGAACAGGCTGAAGGTGCATAAACTGGTTCACAACCCTTCGTTCGTGGCAGAACGCAAGCACCAGTGTGAGGCGTGCGGTAAGACCTACAAGCGCGCCGGCGAGCTTGTGCGCCACATGAACCTTCACACGGGAGAGAACCGATACACGTGCAACGATTGCGGGAAGTGCATGACGAGCAAGTGTTCGCTCAGAGACCACGTGAAAATACACATGGGGGAGAGGCCGGCCGTGTGCGAGATCTGTGGGAAGGCATTTGTCCGGCACGATTACCTCAAAGTTCATCTGCGCTCTCACACGGGGGAGAAGCCGTATTTCTGTGAGACCTGCAACAAGTCTTTTACCCAGCATTCGTCGCTGGTTATTCACAGGCGCTATCATACGGGGCACAGGCCCTACGACTGCTCTGTGTGCAATAAAGGGTTTGTGTCTAAGACCCTTTTGAGGACGCACCAAAGAGTTCATAATCACGGAGCTCTCAATGCAAGATGA
- Protein Sequence
- MTTREQNTCGLTFSRNSPLGSDGETIVPLEWQARIISQNNTLNNNKTDGGDLALPSDLLQKNKCQLCRQTFLLESELTAHILDHAKDPEMSPGYPCPTCGQVFPKRFLMKRHLRRHDDVWQYKCDICSKFYKSKYSLDAHMKWSHSGETKNHSCSVCGYKAYHLSAIRQHEKIHTGVFDYTCGDCGRGFHTKTMLKSHRITAHDDEPFKCNYCGKIYRSKANRDEHVKIHDPDYVHVHQCELCGKTFHTKPELKKHLARHRGDEKYVCEECGKPFKSKTTLVNHTRIHSGDKPYVCMLCGKAFTTSFFLKTHIRIHTGEKPFSCEICSKSFSQKSSLTVHTRTAGIILNSHQDLRGTNLAWMPDLGSTWSLEPASSVVTQTRKADTKPVVPNDRGQFACQWCDKQCMNEYMLRRHIKGAHTTYKCQLCGKEYPQRRMLTRHAKSHTELRPFSCEICARKFKQMFELRKHQKTHTGNKTFACHICDFSAYYKCVLREHVKKHSRDFGYHCEECDKGFHTPQQVDSHKITYHGAQPFQCNVCGKTYAVKNRLKVHKLVHNPSFVAERKHQCEACGKTYKRAGELVRHMNLHTGENRYTCNDCGKCMTSKCSLRDHVKIHMGERPAVCEICGKAFVRHDYLKVHLRSHTGEKPYFCETCNKSFTQHSSLVIHRRYHTGHRPYDCSVCNKGFVSKTLLRTHQRVHNHGALNAR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449807;
- 90% Identity
- iTF_01449807;
- 80% Identity
- -