Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000013.1:17629272-17638631[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.00062 0.12 14.7 2.0 1 23 44 66 44 66 0.95

2 31 0.058 11 8.5 9.5 3 23 74 94 72 95 0.93

3 31 1.2e-05 0.0024 20.0 2.2 2 23 104 125 103 125 0.96

4 31 6.5e-06 0.0013 20.9 0.1 1 23 132 154 132 154 0.97

5 31 2.5e-08 4.8e-06 28.5 0.7 1 23 160 182 160 182 0.98

6 31 0.021 4.1 9.8 0.3 1 12 188 199 188 202 0.91

7 31 0.0015 0.3 13.4 3.3 2 23 207 228 204 229 0.90

8 31 0.92 1.8e+02 4.7 7.8 1 23 234 256 234 256 0.92

9 31 0.00085 0.16 14.2 1.6 1 23 262 284 262 284 0.95

10 31 0.00017 0.032 16.4 1.1 1 23 290 312 290 312 0.95

11 31 0.00055 0.11 14.8 0.9 2 23 322 343 321 343 0.96

12 31 1.2e-05 0.0023 20.1 0.1 1 23 350 372 350 372 0.98

13 31 5.4e-06 0.001 21.1 0.4 3 23 380 400 378 400 0.98

14 31 7e-05 0.014 17.6 1.6 1 21 406 426 406 427 0.94

15 31 0.0055 1.1 11.7 7.0 2 23 446 467 445 468 0.94

16 31 9e-05 0.017 17.3 3.3 1 23 473 495 473 495 0.98

17 31 1e-05 0.002 20.2 3.8 1 23 505 527 505 527 0.98

18 31 0.00011 0.022 17.0 0.7 1 23 532 554 532 554 0.98

19 31 6.8e-07 0.00013 24.0 0.6 2 23 561 582 560 582 0.97

20 31 6.7e-05 0.013 17.7 3.3 1 23 588 610 588 610 0.98

21 31 1.9 3.6e+02 3.7 0.2 1 10 616 625 616 626 0.92

22 31 5.9e-05 0.011 17.9 0.0 1 23 707 729 707 729 0.98

23 31 7.3e-06 0.0014 20.7 1.6 1 23 735 757 735 757 0.96

24 31 0.024 4.6 9.7 2.9 1 23 763 786 763 786 0.93

25 31 0.00089 0.17 14.2 4.9 1 23 792 814 792 814 0.97

26 31 7.5e-05 0.014 17.5 2.4 1 23 820 842 820 842 0.98

27 31 0.086 17 7.9 1.4 1 23 852 874 852 874 0.98

28 31 0.0008 0.15 14.3 0.5 3 23 880 900 879 900 0.97

29 31 4.1e-06 0.00079 21.5 1.2 2 23 907 928 906 928 0.96

30 31 5.6e-06 0.0011 21.1 4.6 1 23 934 956 934 956 0.98

31 31 1.3e-05 0.0024 20.0 0.2 3 23 964 984 962 984 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.00062	0.12	14.7	2.0	1	23	44	66	44	66	0.95
2	31	0.058	11	8.5	9.5	3	23	74	94	72	95	0.93
3	31	1.2e-05	0.0024	20.0	2.2	2	23	104	125	103	125	0.96
4	31	6.5e-06	0.0013	20.9	0.1	1	23	132	154	132	154	0.97
5	31	2.5e-08	4.8e-06	28.5	0.7	1	23	160	182	160	182	0.98
6	31	0.021	4.1	9.8	0.3	1	12	188	199	188	202	0.91
7	31	0.0015	0.3	13.4	3.3	2	23	207	228	204	229	0.90
8	31	0.92	1.8e+02	4.7	7.8	1	23	234	256	234	256	0.92
9	31	0.00085	0.16	14.2	1.6	1	23	262	284	262	284	0.95
10	31	0.00017	0.032	16.4	1.1	1	23	290	312	290	312	0.95
11	31	0.00055	0.11	14.8	0.9	2	23	322	343	321	343	0.96
12	31	1.2e-05	0.0023	20.1	0.1	1	23	350	372	350	372	0.98
13	31	5.4e-06	0.001	21.1	0.4	3	23	380	400	378	400	0.98
14	31	7e-05	0.014	17.6	1.6	1	21	406	426	406	427	0.94
15	31	0.0055	1.1	11.7	7.0	2	23	446	467	445	468	0.94
16	31	9e-05	0.017	17.3	3.3	1	23	473	495	473	495	0.98
17	31	1e-05	0.002	20.2	3.8	1	23	505	527	505	527	0.98
18	31	0.00011	0.022	17.0	0.7	1	23	532	554	532	554	0.98
19	31	6.8e-07	0.00013	24.0	0.6	2	23	561	582	560	582	0.97
20	31	6.7e-05	0.013	17.7	3.3	1	23	588	610	588	610	0.98
21	31	1.9	3.6e+02	3.7	0.2	1	10	616	625	616	626	0.92
22	31	5.9e-05	0.011	17.9	0.0	1	23	707	729	707	729	0.98
23	31	7.3e-06	0.0014	20.7	1.6	1	23	735	757	735	757	0.96
24	31	0.024	4.6	9.7	2.9	1	23	763	786	763	786	0.93
25	31	0.00089	0.17	14.2	4.9	1	23	792	814	792	814	0.97
26	31	7.5e-05	0.014	17.5	2.4	1	23	820	842	820	842	0.98
27	31	0.086	17	7.9	1.4	1	23	852	874	852	874	0.98
28	31	0.0008	0.15	14.3	0.5	3	23	880	900	879	900	0.97
29	31	4.1e-06	0.00079	21.5	1.2	2	23	907	928	906	928	0.96
30	31	5.6e-06	0.0011	21.1	4.6	1	23	934	956	934	956	0.98
31	31	1.3e-05	0.0024	20.0	0.2	3	23	964	984	962	984	0.98

Sequence Information

Coding Sequence: ATGAATAGGTGCAAAAATGAAGTTCACTTTAGGAATAAATGGCCCAACTTTATTCAAGACTGCAACTTTGTCACCCATAAGAAGAGCTACATATATAGACACTGCAAGAATCACGCCAATAACTTCACCCACTTCTGTGACGTCTGTCAGAAAGGTTTCCGTAACAATACCTCGTTGTTGCAACATAAAATAGTCCATACGGGACTGAAACCTCACCTGTGCGATATTTGTGCCAAATCGTTCACTACGAAGCATTGCTTGAAACTTCACAAGATAAGGCACCACTCTGACTACCAACCGAAATTGGTCGAGTGTGGAGTCTGCCATCGCGTGTTCAAGCGCAGGTACAGTTTGAAGCAACACATGTCCCAACACACAGGGGACGCATCCAAGTTTGTCTGCGACGTCTGCGGTAAGGTTGTGTCCACAGCGTCTTATCTCCGTGTCCACAAGAGGGCACATTCCGGAGAGAAGCCCTTTGTATGCAATGTTTGTGACAAGGCGTTCAGTGACAGTAAATATTTGCGTGTCCATATGCGCACCCACACAGGCGAGCGCCCGTACATGTGTAACCTCTGCGGTAAAACGTTCACCCAAGGACAACACGGCTATGTGTGCTCTTGCAACGTGTGCGGGATGAATTTCAAAAGCCGTAAGAGTCTGAAGCTCCATTCTGCCGTACATCACAAGGAGTTTAAGTATTTTTGTGACCATTGCAACTTTGTTACATACAGGAAGAGTTACCTTCGCATGCACTGCAAAAACCACACAAACAACTTTTCACATTTTTGCGACGTCTGCCGGAAAGGTTTCCGCAACAAGGCTTCGTTACTGGAACACAAGCTCGTCCACACGGGACTGAAACCGTATCTCTGCGATAACTGTGGTGAGTCGTTCACCACCAACCAGCGGTTGAAAGTGCACAAGCTGAGGCACGATGCCGACCACCGGCCAGAGTTGATCCAGTGCGGCGTTTGTCAGCGGTTGTTCACGTTCAGGAACAGTTTGAAGCGCCACATGGCCCAGCATACGGGCAACATGCCCAAGTTTGTCTGTGAGGTCTGCGGTAAGGTGCTGACATCCAGACCGTCCCTCAGGGTACACGAGAGGACACACAGCGGGGAAAAGCCCTTTGGTTGTAAAGTTTGTGGCAAAGCGTTTGGTGGCAAGACCTACTTGCGTGTCCATATGCGCACCCACACGGGTGAACGCCCCTACTCGTGTGACCTCTGTGGTAAAACTTTCACCCAAAGATCTTGTTTATGGGGTCACACTAAGAGTCGCCAGTCTTATTGCAAACTTCACAGAATGAGGCACTTGAAAGCTTTCACGCTCCATTGCAAACATTGCGGAAAAGGATTTCACACTCGCACAGAGCTACAAGGTCATGTAAATGTACACCACGGCGGAAACAAGTTTGTTTGCCATGTTTGCAAGCGGGTGTATCCGCATAGATATGTACTAGAGCGTCATTTAAGGATGCACGAGCCAGGCTATGAACTCAAGAAAAGGCACCAGTGTGAGACCTGCGGTAAAACATTCGCGTACAAAAGTTCACTTAATTCGCATAGCAAGCGTCACGCCGGCCACACGTTTGTCTGCGACGTGTGCGGAAAGTGCATGACTAGTCGCTGGTCACTGGTGACTCACTTGAGGATCCACTCTGGTGAGAAACCCTTGGTATGCGATGTTTGTGGGAAGTCGTTCACAAAGAGCACTGGTCTAAAAGTTCACAGACGAACACACACTGAAGAGAGGCCGTACAGCTGCGACCTGTGCGGGAAATCGTTCACCCAGTGCTCGACGATGGTCATTCACAAGCGGTACCATTCGGGGCTCAGGCCCTTTGAGTGTGCGGAATGTGGCAGGTCATACATACTAGGTAATATTTCTTTGAGAAATCAGAAGCGGGGCACAGACCTTTCCCTGTTATTTATAAAGAACTCTTCATCGCCAGTCGAGGGCAGGCCACTGCTGGCGAAAACTCGTTCAGGTACTGGTTCGGAAACAACACTTCCTGAAGGTGATGGGTCGTCGAATAACTCGCTCGACTCTATGAATTCAAATGACGTGTACAAGCTCAAAACACACATGGAGATTCATAGAGCTGAGAAGAGATATGTGTGTACCGTGTGTGGAGTTGCGTTTGTCTTGAAGGCGTACTTGAATTCTCACATGCTTATCCACAGCGACGACCGTCCCCACGCCTGCGAGGTGTGCGGCAAGCAGTTTAAACGTAAACAGCAGCTGAAACTCCATTTACTGATACACAAGAACGAAAGGAACCATGTGTGTGACATTTGTGGGTCTGCCTTCATCCAGAGGACTCAGTTGATTTATCACTGCAGAAGGAAACACACAAAGGAAACTACATTTCATTGCGACGTCTGTGGCAAGGGTTTCTACAACCGCAATCATTTCACGGATCACACTAATTTACACACCGGTTATTTCCCCTACAAATGTGAAGTGTGCGGCAAGTCTTACAAGGTGTACTCGAGTTTTCGGTATCACAAGGAAACCCACGTGACAAAGTCTGAGTCTGGGGAGATGTTCAAGTGCGAAACTTGTCTTGAGATATTCTCTACGAAACTCATTCTGACGTTACATAAGAGGAGACATGCGCCCAAGCGGGCGTGCCGACTGTGCAACAAGCAACTGTCAAGTTCCGAGTCGCTCAAAGTCCACCTTCGCATACACGCCGGCGAGAAGCCTTGTATCTGCGATGTTTGCGGAAAGAGGTTTGTGTCGCGGCCGCTTCTGAGGATCCACCAGAGAACACACACCGGGGTGAAACCGTACTCTTGTAACGTCTGCGGGAAGACGTTCACACAGCGCTGCACGCTGACGGTGCATAGAAGATATCATACCGGCGAAACTCCGTATGGCTGCCAAGTCTGCCCGAAGGCTTTTGTCTCAAAGAACTTGCTTAAGGCACATTTAAAGACTCATGAAAAACAAATGTCAATCAGATGCTGTGCAGTGGCAGGGcagttgtattaa
Protein Sequence: MNRCKNEVHFRNKWPNFIQDCNFVTHKKSYIYRHCKNHANNFTHFCDVCQKGFRNNTSLLQHKIVHTGLKPHLCDICAKSFTTKHCLKLHKIRHHSDYQPKLVECGVCHRVFKRRYSLKQHMSQHTGDASKFVCDVCGKVVSTASYLRVHKRAHSGEKPFVCNVCDKAFSDSKYLRVHMRTHTGERPYMCNLCGKTFTQGQHGYVCSCNVCGMNFKSRKSLKLHSAVHHKEFKYFCDHCNFVTYRKSYLRMHCKNHTNNFSHFCDVCRKGFRNKASLLEHKLVHTGLKPYLCDNCGESFTTNQRLKVHKLRHDADHRPELIQCGVCQRLFTFRNSLKRHMAQHTGNMPKFVCEVCGKVLTSRPSLRVHERTHSGEKPFGCKVCGKAFGGKTYLRVHMRTHTGERPYSCDLCGKTFTQRSCLWGHTKSRQSYCKLHRMRHLKAFTLHCKHCGKGFHTRTELQGHVNVHHGGNKFVCHVCKRVYPHRYVLERHLRMHEPGYELKKRHQCETCGKTFAYKSSLNSHSKRHAGHTFVCDVCGKCMTSRWSLVTHLRIHSGEKPLVCDVCGKSFTKSTGLKVHRRTHTEERPYSCDLCGKSFTQCSTMVIHKRYHSGLRPFECAECGRSYILGNISLRNQKRGTDLSLLFIKNSSSPVEGRPLLAKTRSGTGSETTLPEGDGSSNNSLDSMNSNDVYKLKTHMEIHRAEKRYVCTVCGVAFVLKAYLNSHMLIHSDDRPHACEVCGKQFKRKQQLKLHLLIHKNERNHVCDICGSAFIQRTQLIYHCRRKHTKETTFHCDVCGKGFYNRNHFTDHTNLHTGYFPYKCEVCGKSYKVYSSFRYHKETHVTKSESGEMFKCETCLEIFSTKLILTLHKRRHAPKRACRLCNKQLSSSESLKVHLRIHAGEKPCICDVCGKRFVSRPLLRIHQRTHTGVKPYSCNVCGKTFTQRCTLTVHRRYHTGETPYGCQVCPKAFVSKNLLKAHLKTHEKQMSIRCCAVAGQLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450787; iTF_01444984;
90% Identity: iTF_01450787;
80% Identity: -