Tbar005161.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000211.1:304319-316277[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.00081 0.18 14.5 2.0 1 23 25 47 25 47 0.95 2 33 0.075 17 8.3 9.5 3 23 55 75 53 76 0.93 3 33 1.3e-05 0.0029 20.1 1.5 2 23 85 106 84 106 0.96 4 33 8.4e-06 0.0019 20.7 0.1 1 23 113 135 113 135 0.97 5 33 3.2e-08 7.2e-06 28.3 0.7 1 23 141 163 141 163 0.98 6 33 0.039 8.7 9.2 0.6 1 12 169 180 169 182 0.93 7 33 0.0024 0.54 13.0 1.5 2 23 248 269 247 269 0.96 8 33 0.0015 0.34 13.6 3.4 2 23 274 295 271 296 0.90 9 33 1.2 2.7e+02 4.5 7.8 1 23 301 323 301 323 0.92 10 33 0.0011 0.25 14.1 1.6 1 23 329 351 329 351 0.95 11 33 0.00022 0.049 16.3 1.1 1 23 357 379 357 379 0.95 12 33 0.00072 0.16 14.6 0.9 2 23 389 410 388 410 0.96 13 33 1.5e-05 0.0034 19.9 0.1 1 23 417 439 417 439 0.98 14 33 7e-06 0.0016 21.0 0.4 3 23 447 467 445 467 0.98 15 33 0.025 5.6 9.8 5.8 1 23 483 505 483 505 0.98 16 33 0.0071 1.6 11.5 7.0 2 23 512 533 511 534 0.94 17 33 0.14 31 7.4 5.5 1 23 539 561 539 561 0.98 18 33 7.3e-05 0.016 17.8 4.6 1 23 571 593 571 593 0.98 19 33 0.00011 0.025 17.2 0.7 1 23 598 620 598 620 0.98 20 33 8.8e-07 0.0002 23.8 0.6 2 23 627 648 626 648 0.97 21 33 8.7e-05 0.02 17.5 3.3 1 23 654 676 654 676 0.98 22 33 2.4 5.4e+02 3.5 0.2 1 10 682 691 682 692 0.92 23 33 7.6e-05 0.017 17.7 0.0 1 23 773 795 773 795 0.98 24 33 9.5e-06 0.0021 20.5 1.6 1 23 801 823 801 823 0.96 25 33 0.031 6.9 9.5 2.9 1 23 829 852 829 852 0.93 26 33 0.0012 0.26 14.0 4.9 1 23 858 880 858 880 0.97 27 33 9.7e-05 0.022 17.4 2.4 1 23 886 908 886 908 0.98 28 33 0.11 25 7.7 1.4 1 23 918 940 918 940 0.98 29 33 0.001 0.23 14.1 0.5 3 23 946 966 945 966 0.97 30 33 5.3e-06 0.0012 21.3 1.2 2 23 973 994 972 994 0.96 31 33 7.3e-06 0.0016 20.9 4.6 1 23 1000 1022 1000 1022 0.98 32 33 4 8.9e+02 2.9 0.9 1 19 1044 1062 1044 1064 0.82 33 33 9e-06 0.002 20.6 2.6 2 23 1072 1093 1071 1093 0.98
Sequence Information
- Coding Sequence
- ATGTGCAACTTTGTCACCCATAAGAAGAGCTACATATATAGACACTGCAAGAATCACGCCAATAACTTCACCCACTTCTGTGACGTCTGTCAGAAAGGTTTCCGTAACAATACCTCGCTGTTACAACATAAAATAGTCCATACAGGATTGAAACCTCACCTGTGCGATATTTGTGCCAAATCGTTCACTACGAAGCATTGCTTGAAACTTCACAAGATAAGGCACCACTCTGACTACCAACCGAAATTGGTCGAGTGTGGAGTCTGCCATCGCGTGTTCAAGCGCAGGTACAGTTTGAAGCAACACATGGCCCAGCACACAGGGGACGCATCCAAGTTTGTCTGCGACGTCTGCGGTAAGGTTGTGTCCACGGCGTCTTATCTCCGTGTCCACAAGAGGGCACATTCCGGAGAGAAGCCCTTTGTGTGCAACGTTTGTGACAAGGCGTTTAGTGACAGTAAATATTTGCGTGTCCATATGCGCACCCACACAGGCGAGCGCCCGTACATGTGTAACCTCTGCGGTAAAACGTTCACCCAAGGGTTCACAAATGAAATTCCGTTTAATAATGCCTGGCTCAACTTTTATCAAGATATCAAACCTTTTGTTAACATTTACTCgaattttaacaaaactacAACCTCTATATTATCAGAAAGGAAGAACGGAGGCAGTGCGCAGTGTTTAAAAAACACTGATCCTCACAAAATTTCTCTTCCAAGAAGCCTAACAGAAAAAGTGAGTTGCGAACTTTGCGGAAAAAgctatttttccaaaaaaagaCTGGAAAGTCACTTCAGACAACATGGCTACGTGTGCTCTTGCAACGTGTGCGGGATGAATTTCAAAAACCGTAAGAGTCTGAAGCTCCATTCTGCCGTACATCACAAGGAGTTTAAGTATTTTTGTGACCATTGCAACTTTGTTACATACAGGAAGAGTTACCTTCGCATGCACTGCAAAAACcacgaaaacaacttttcacATTTTTGCGACGTCTGCCGGAAAGGTTTCCGCAACAAGGCCTCGTTACTGGAACACAAGCTCGTCCACACGGGACTGAAACCGTATCTCTGCGATAACTGTGGTGAGTCGTTCACCACCAACCAGCGGTTGAAAGTGCACAAGCTGAGGCACGATGCCGACCACCGGCCAGAGTTGATCCAGTGCGGCGTTTGTCAGCGGTTGTTCACGTTCAGGAACAGTTTGAAGCGCCACATGGCCCAGCATACGGGCAACATGCCCAAGTTTGTCTGTGAGGTCTGCGGTAAGGTGCTGACATCCAGGCCCTCCCTCAGGGTACACGAGAGGACACACAGTGGGGAAAAGCCCTTCGGTTGTAAAGTTTGTGGCAAAGCGTTTGGTGGCAAGACCTACTTGCGTGTCCATATGCGCACCCACACGGGTGAACGTCCCTACTCGTGTGACCTCTGTGGTGAAAAGAAGTTCAAGTGTGACATGTGCGACTCTACATTTAGTCGCCAGTCTTATTGCAAACTTCACAGAATGAGGCACTTGAAAGCTTTCACGCTCCATTGCAAACATTGCGGAAAAGGGTTTCACACTCGCACAGAGCTACAAGGTCATGTAAATGTGCACCACGGCGGAAACATGTTTGTTTGCCATGTTTGCAAGCGGGTGTATCCGCATAGATATGTACTAGAGTGTCATTTAAGGATGCACGAGCCAGGCTATGAACTCAAGAAAAGGCACCAGTGTGAGACCTGCGGTAAAACATTCACGTACAAAAATTCACTTAATCTGCATAGTAAGCGTCACGCCGGCCACACGTTTGTCTGCGATGTGTGCGGAAAGTGCATGACTAGTCGCTGGTCACTGGTGAATCACTTGAGGATTCACTCTGGTGAGAAACCCTTGGTGTGCGATGTTTGTGGGAAGTCATTCACAAAGAGCACTGGTCTTAAAGTTCACAGACGAACACACACTGGAGAGAGACCGTACAGCTGCGACCTGTGCGGGAAATCGTTCACTCAGTGCTCGACGATGGTCATTCACAAGCGGTACCATTCGGGGCTCAGGCCCTTTGAGTGTGCGGAATGTGGCAGGTCATACATACTAGGTAATATTTCTTTGAGAAATCAGAAGCGGGGCACAGACCTTTCCCTGTTATTTATAAAGAACTCTTCATCGCCAGTCGAGGGCAGGCCACTGCTGGCGAAAACTCGTTCAGGTACTGGTTCGGAAACAACACTTCCCGAAGGTGATGGGTCGTCGAATAACTCGCTCGACTCTATGAATTCAAATGACGTGTACAAGCTCAAAACACACATGGAGATTCATAGAGGTGAGAAGAGATATGTGTGTACCGTGTGTGGGGTAGCGTTTGTCTTGAAGGCGTACTTGAATTCTCACATGCTTATCCACAGCGACGACCGTCCCCACGCCTGCGAGGTATGCGGCAAGCAGTTTAAACGTAAACAGCAGCTGAAACTCCATTTACTGATACACAAGAACGAAAGGAACCATGTTTGTGACATTTGTGGGTCTGCCTTCATCCAAAGGACTCAGTTGATTTATCACTGCAGAAGGAAACACACAAAGGAAACTACATTTCATTGCGACGTCTGTGGCAAGGGTTTCTACAACCGCAATCATTTCACGGATCACACTAATTTACACACTGGTTATTTCCCCTACAAATGTGAAGTGTGCGGCAAGTCTTACAAGGTGTACTCGAGTTTTCGGTATCACAAGGAAACCCACGTGACAAAGTCTGAGTCTGGGGAGATGTTCAAGTGCGAAACTTGTCTTGAAATATTCTCTACGAAACTCATTCTGACGTTACATAAGAGGAGACATGCGCCCAAGCGGGCGTGCCGACTGTGCAACAAGCAACTCTCAAGTTCCGAGTCGCTCAAAGTTCACCTTCGCATACACGCCGGCGAGAAGCCTTGTATATGCGATGTTTGTGGAAAGAGGTTTGTGTCGCGGCCGCTTCTGAGGATCCACCAGAGAACACACACCGGGGTAAAACCGTACTCTTGTAACGTCTGCGGGAAGACGTTCACACAGCGCTGCACGCTGACGGTGCATAGAAGATACCATACCGGCGAAACTCCGTTTCATCATTACGATGAGCACAAGAACTTACATACAGGAAACAAGCCGTTCAATTGCGGGATATGTGGTAAGTTGTACGGTGTTTACCATCACAAGCGTTCGCATGTAGAGGGATTGGACCTTAACACCAACCAGTGTGAAACTTGCGGCAAGCATTTCACCAACAAACGGACACTGGCAATCCATGTGCGGACTCACTCGGACAAGAGGATTTTATGTGATCTGTGCGGGAAAGCTCTCTCAGGAACAGTCTTTGAAGATACACTTGCATATTCGTGCTGGAGATAA
- Protein Sequence
- MCNFVTHKKSYIYRHCKNHANNFTHFCDVCQKGFRNNTSLLQHKIVHTGLKPHLCDICAKSFTTKHCLKLHKIRHHSDYQPKLVECGVCHRVFKRRYSLKQHMAQHTGDASKFVCDVCGKVVSTASYLRVHKRAHSGEKPFVCNVCDKAFSDSKYLRVHMRTHTGERPYMCNLCGKTFTQGFTNEIPFNNAWLNFYQDIKPFVNIYSNFNKTTTSILSERKNGGSAQCLKNTDPHKISLPRSLTEKVSCELCGKSYFSKKRLESHFRQHGYVCSCNVCGMNFKNRKSLKLHSAVHHKEFKYFCDHCNFVTYRKSYLRMHCKNHENNFSHFCDVCRKGFRNKASLLEHKLVHTGLKPYLCDNCGESFTTNQRLKVHKLRHDADHRPELIQCGVCQRLFTFRNSLKRHMAQHTGNMPKFVCEVCGKVLTSRPSLRVHERTHSGEKPFGCKVCGKAFGGKTYLRVHMRTHTGERPYSCDLCGEKKFKCDMCDSTFSRQSYCKLHRMRHLKAFTLHCKHCGKGFHTRTELQGHVNVHHGGNMFVCHVCKRVYPHRYVLECHLRMHEPGYELKKRHQCETCGKTFTYKNSLNLHSKRHAGHTFVCDVCGKCMTSRWSLVNHLRIHSGEKPLVCDVCGKSFTKSTGLKVHRRTHTGERPYSCDLCGKSFTQCSTMVIHKRYHSGLRPFECAECGRSYILGNISLRNQKRGTDLSLLFIKNSSSPVEGRPLLAKTRSGTGSETTLPEGDGSSNNSLDSMNSNDVYKLKTHMEIHRGEKRYVCTVCGVAFVLKAYLNSHMLIHSDDRPHACEVCGKQFKRKQQLKLHLLIHKNERNHVCDICGSAFIQRTQLIYHCRRKHTKETTFHCDVCGKGFYNRNHFTDHTNLHTGYFPYKCEVCGKSYKVYSSFRYHKETHVTKSESGEMFKCETCLEIFSTKLILTLHKRRHAPKRACRLCNKQLSSSESLKVHLRIHAGEKPCICDVCGKRFVSRPLLRIHQRTHTGVKPYSCNVCGKTFTQRCTLTVHRRYHTGETPFHHYDEHKNLHTGNKPFNCGICGKLYGVYHHKRSHVEGLDLNTNQCETCGKHFTNKRTLAIHVRTHSDKRILCDLCGKALSGTVFEDTLAYSCWR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449804;
- 90% Identity
- -
- 80% Identity
- -