Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010000162.1:97730-107819[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.00071 0.19 14.6 2.0 1 23 45 67 45 67 0.95

2 31 0.066 18 8.4 9.5 3 23 75 95 73 96 0.93

3 31 2.9e-05 0.0079 19.0 0.5 2 23 105 126 104 126 0.96

4 31 7.5e-06 0.002 20.8 0.1 1 23 133 155 133 155 0.97

5 31 2.8e-08 7.7e-06 28.4 0.7 1 23 161 183 161 183 0.98

6 31 0.022 6 9.9 0.3 1 12 189 200 189 203 0.90

7 31 0.012 3.4 10.7 1.5 2 23 229 250 228 250 0.96

8 31 0.0018 0.49 13.3 3.3 2 23 255 276 252 277 0.88

9 31 0.3 82 6.3 7.3 1 23 282 304 282 304 0.92

10 31 0.00098 0.27 14.2 1.0 1 23 310 332 310 332 0.95

11 31 0.00019 0.052 16.4 1.1 1 23 338 360 338 360 0.95

12 31 0.00064 0.17 14.8 0.9 2 23 370 391 369 391 0.96

13 31 1.2e-05 0.0032 20.2 0.1 1 23 398 420 398 420 0.98

14 31 6.2e-06 0.0017 21.1 0.4 3 23 428 448 426 448 0.98

15 31 8.1e-05 0.022 17.6 1.6 1 21 454 474 454 475 0.94

16 31 0.0042 1.1 12.2 4.9 2 23 494 515 493 516 0.94

17 31 0.12 32 7.6 3.1 1 23 521 543 521 543 0.98

18 31 1.7e-05 0.0046 19.7 3.4 1 23 553 575 553 575 0.98

19 31 1.2e-05 0.0034 20.1 0.5 1 23 580 602 580 602 0.98

20 31 7.8e-07 0.00021 23.9 0.6 2 23 609 630 608 630 0.97

21 31 0.00014 0.039 16.8 1.0 1 21 636 656 636 657 0.94

22 31 6.7e-05 0.018 17.8 0.0 1 23 740 762 740 762 0.98

23 31 8.4e-06 0.0023 20.7 1.6 1 23 768 790 768 790 0.96

24 31 0.027 7.4 9.6 2.9 1 23 796 819 796 819 0.93

25 31 0.001 0.28 14.1 4.9 1 23 825 847 825 847 0.97

26 31 8.6e-05 0.023 17.5 2.4 1 23 853 875 853 875 0.98

27 31 0.099 27 7.9 1.4 1 23 885 907 885 907 0.98

28 31 0.00092 0.25 14.3 0.5 3 23 913 933 912 933 0.97

29 31 4.7e-06 0.0013 21.5 1.2 2 23 940 961 939 961 0.96

30 31 6.5e-06 0.0018 21.0 4.6 1 23 967 989 967 989 0.98

31 31 1.5e-05 0.004 19.9 0.2 3 23 997 1017 995 1017 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.00071	0.19	14.6	2.0	1	23	45	67	45	67	0.95
2	31	0.066	18	8.4	9.5	3	23	75	95	73	96	0.93
3	31	2.9e-05	0.0079	19.0	0.5	2	23	105	126	104	126	0.96
4	31	7.5e-06	0.002	20.8	0.1	1	23	133	155	133	155	0.97
5	31	2.8e-08	7.7e-06	28.4	0.7	1	23	161	183	161	183	0.98
6	31	0.022	6	9.9	0.3	1	12	189	200	189	203	0.90
7	31	0.012	3.4	10.7	1.5	2	23	229	250	228	250	0.96
8	31	0.0018	0.49	13.3	3.3	2	23	255	276	252	277	0.88
9	31	0.3	82	6.3	7.3	1	23	282	304	282	304	0.92
10	31	0.00098	0.27	14.2	1.0	1	23	310	332	310	332	0.95
11	31	0.00019	0.052	16.4	1.1	1	23	338	360	338	360	0.95
12	31	0.00064	0.17	14.8	0.9	2	23	370	391	369	391	0.96
13	31	1.2e-05	0.0032	20.2	0.1	1	23	398	420	398	420	0.98
14	31	6.2e-06	0.0017	21.1	0.4	3	23	428	448	426	448	0.98
15	31	8.1e-05	0.022	17.6	1.6	1	21	454	474	454	475	0.94
16	31	0.0042	1.1	12.2	4.9	2	23	494	515	493	516	0.94
17	31	0.12	32	7.6	3.1	1	23	521	543	521	543	0.98
18	31	1.7e-05	0.0046	19.7	3.4	1	23	553	575	553	575	0.98
19	31	1.2e-05	0.0034	20.1	0.5	1	23	580	602	580	602	0.98
20	31	7.8e-07	0.00021	23.9	0.6	2	23	609	630	608	630	0.97
21	31	0.00014	0.039	16.8	1.0	1	21	636	656	636	657	0.94
22	31	6.7e-05	0.018	17.8	0.0	1	23	740	762	740	762	0.98
23	31	8.4e-06	0.0023	20.7	1.6	1	23	768	790	768	790	0.96
24	31	0.027	7.4	9.6	2.9	1	23	796	819	796	819	0.93
25	31	0.001	0.28	14.1	4.9	1	23	825	847	825	847	0.97
26	31	8.6e-05	0.023	17.5	2.4	1	23	853	875	853	875	0.98
27	31	0.099	27	7.9	1.4	1	23	885	907	885	907	0.98
28	31	0.00092	0.25	14.3	0.5	3	23	913	933	912	933	0.97
29	31	4.7e-06	0.0013	21.5	1.2	2	23	940	961	939	961	0.96
30	31	6.5e-06	0.0018	21.0	4.6	1	23	967	989	967	989	0.98
31	31	1.5e-05	0.004	19.9	0.2	3	23	997	1017	995	1017	0.98

Sequence Information

Coding Sequence: ATGAGCCATTTCATTTCTCTCGATTCTAGCCCTAACAAAACCTCAACCTCGGAAACTACAAAGTGCAACTTTGTCACCCATAAGAAGAGCTACATATATAGACACTGCAAGAATCACACCAATAACTTCACCCACTTCTGTGACGTCTGTCAGAAAGGTTTTCGTAACAATACCTCGTTGTTACAACATAAAATAGTCCATACGGGACTGAAACCTCACCTGTGTGATATTTGTGCCAAATCGTTCACTACGAAGCATTGCTTGAAACTTCACAAGATAAGGCACCACTCTGACTACCGGCCGAAACTGGTCGAGTGTGGAGTCTGTCGTCGCGTGTTCAAGCGCAGGTACAGCTTGAATCAGCACATGGCCCAACACACGGGGGACGCCTCCAAGTTTGTCTGCGACGTCTGCGGCAAGGTTGTGTCCACGGCGTCTTATCTCCGCGTCCACAAGAGGGCGCATTCAGGAGAGAAGCCCTTTGTATGCAATGTTTGTGACAAGGCATTTAGCGACAGTAAATATTTGCGTGTGCATATGCGCACCCACACGGGCGAGCGCCCGTACATGTGTAACCTTTGTGGTAAAACGTTCACCCAGGGGAGGAACGGAGGCAGTGAGCAGTGTTCAAAAAACACCGATCCTCACGAAGTTTCACTTCCGAGAAACCTAACAGAAAAAGTGAGTTGCGAACTTTGTGGGAAAAGCTATTTTTCCAAGAAAAGACTGGACAGTCACTTCAGACAACACGGCTACGTGTGCTCTTGCAGCGTGTGCGGGATGAATTTCAAGAACCGAAAGAGCCTGAAGCTTCATTCCGCCGTACATCACAAGGAGTTTAAGTATTTTTGCGACCATTGCAACTTTGTCACCTACAGGAAGAGCTACCTTCGCGCGCACTGCAAAAACCACACGAGCAACTTTTCACATTTTTGCGACGTCTGCCGGAAAGGTTTCCGCAACAAGGCCTCGTTACTGGAACACGAGCTCGTCCACACGGGACTGAAACCTTATCTCTGCGATAACTGCGGCGAGTCGTTCACCACCAACCAGCGGCTGAAAGTGCACAAGCTGAGGCACGACGCCGACCACCGGCCGGAGTTGATCCAGTGCGGCGTCTGTCAGCGGCTGTTCACGTTCAGGAACAGTTTGAAGCGCCACATGGCCCAGCACACGGGCGACACACCCAAGTTTGTCTGTGAGGTCTGCGGTAAGGTGCTGACATCCAGCCCCTCCCTCAGGGTGCACGAGAGGACACACAGTGGGGAGAAGCCCTTCGGTTGTAAAGTTTGTGGCAAAGCGTTTGGCGGCAAGACCTACTTGCGTGTCCATATGCGCACCCACACGGGTGAACGTCCCTACTCGTGTGACCTCTGTGGTAAAACTTTCACCCAAAGGTCTTGTTTATGGGGTCACACCAAGAGTCGCCAGTCTTATTGCAAACTTCACACAATGAGGCACTTGAAAGCTTTCACACTTCATTGCAAACAGTGCGGAAAAGGATTTCACACTCGCACAGAGCTACAAGGTCATGTAAATGTCCACCATGGCGGAAACAAGTTTGTTTGCCAAGTTTGCAAGCGGGCGTATCCCCATAGATATGTCCTAGAGTGCCATTTAAGGATGCACGAGCCAGGCTACGAACGCAAGAAAAGGCACCAGTGCGAGACCTGCGGTAAAACATTTGCGTACAAAAGTTCACTTAATTTGCATAGTAAGCGTCACGCCGGCCACACGTTTGTCTGCGACGTGTGCGGAAAGTGCGTGACTAGTCGCTGGTCACTGGTGACTCACCTGAGGATTCACTCTGGTGAGAAACCGTTGGTGTGCGATGTTTGCGGGAAGTCGTTCACAAAGAGCACCGGTCTTAAAGTTCACCGACGAACACACACCGGTGAGAGACCGTACGCCTGTGACCTGTGCGGGAAATCGTTCACCCAGTGCTCGACGATGATAATTCACAAGCGGTCATACATACTAGGTAATATTTCTTTGAGAGATCAGAAGCGGGGCACAGACCTTTCCCTGTTATTTATAAAGAACTCTTCATCGCCAGTCGAGGGCGGGCCACTGCTGGCGAAAACTCTTTCAGGTATTGGTTCGGAAACGACGCTGCCCGAAGGTGATGGGTCGTCGAATAACTCGCTCGACTCTATGAATTCAAATGACGTGTACAAGCTCAAAACACACATGGAGATTCACAGAGGGGAGAAGAGATACGTGTGTACTGTGTGCGGGGTTGCGTTTGTCTTGAAGGCGTACTTGAACTCTCACATGCTTATCCACAGTGACGACCGTCCCCATGCCTGCGAGGTATGCGGCAAGCAGTTCAAACGTAAACAACAGTTGAAACTCCATTTACTGATACACAAGAATGAAAGGAATCATGTTTGTGACATTTGCGGGTCTGCCTTCATCCAGAGGACTCAACTGATCTATCACTGCAGGAGGAAACACACGAAGGAAACTACATTCCATTGCGACGTCTGTGGCAAAGGTTTCTACAACCGCAATCATTTCACAGATCACACCAATCTACACACCGGTTATTTCCCCTACAAGTGCGAAGTGTGCGGCAAGTCTTACAAGGTGTACTCGAGTTTCCGGTATCACAAGGAAACCCACGTGACAAAGTCTGAGTCCGGGGAGATGTTCAAGTGTGAAACTTGTCTTGAAATATTCTCTACGAAACTCATTCTGACGTTACATAAGAGGAGACACGCGCCCAAGCGGGCGTGCCGGCTGTGCAACAAGCAACTGTCAAGTTCAGAGTCGCTCAAAGTCCACCTTCGCATACACGCCGGCGAGAAGCCTTGCATATGTGATGTTTGCGGGAAGAGGTTCGTGTCGCGGCCGCTCCTGAGGATCCACCAGAGAACACACACCGGGGTGAAACCGTACTCTTGTAACGTCTGCGGGAAGACGTTCACGCAGCGCTGCACGCTGACGGTGCATAGAAGATATCATACCGGCGAAACTCCGTATGGATGCCAAGTCTGCCCAAAGGCTTTTGTCTCAAAGAACTTGCTTAAGGCACATTTAAAGACTCATGAAAAACAAATGTCAGTCGGATGCTGTGCAGTGGCGGGgcagttgtattaa
Protein Sequence: MSHFISLDSSPNKTSTSETTKCNFVTHKKSYIYRHCKNHTNNFTHFCDVCQKGFRNNTSLLQHKIVHTGLKPHLCDICAKSFTTKHCLKLHKIRHHSDYRPKLVECGVCRRVFKRRYSLNQHMAQHTGDASKFVCDVCGKVVSTASYLRVHKRAHSGEKPFVCNVCDKAFSDSKYLRVHMRTHTGERPYMCNLCGKTFTQGRNGGSEQCSKNTDPHEVSLPRNLTEKVSCELCGKSYFSKKRLDSHFRQHGYVCSCSVCGMNFKNRKSLKLHSAVHHKEFKYFCDHCNFVTYRKSYLRAHCKNHTSNFSHFCDVCRKGFRNKASLLEHELVHTGLKPYLCDNCGESFTTNQRLKVHKLRHDADHRPELIQCGVCQRLFTFRNSLKRHMAQHTGDTPKFVCEVCGKVLTSSPSLRVHERTHSGEKPFGCKVCGKAFGGKTYLRVHMRTHTGERPYSCDLCGKTFTQRSCLWGHTKSRQSYCKLHTMRHLKAFTLHCKQCGKGFHTRTELQGHVNVHHGGNKFVCQVCKRAYPHRYVLECHLRMHEPGYERKKRHQCETCGKTFAYKSSLNLHSKRHAGHTFVCDVCGKCVTSRWSLVTHLRIHSGEKPLVCDVCGKSFTKSTGLKVHRRTHTGERPYACDLCGKSFTQCSTMIIHKRSYILGNISLRDQKRGTDLSLLFIKNSSSPVEGGPLLAKTLSGIGSETTLPEGDGSSNNSLDSMNSNDVYKLKTHMEIHRGEKRYVCTVCGVAFVLKAYLNSHMLIHSDDRPHACEVCGKQFKRKQQLKLHLLIHKNERNHVCDICGSAFIQRTQLIYHCRRKHTKETTFHCDVCGKGFYNRNHFTDHTNLHTGYFPYKCEVCGKSYKVYSSFRYHKETHVTKSESGEMFKCETCLEIFSTKLILTLHKRRHAPKRACRLCNKQLSSSESLKVHLRIHAGEKPCICDVCGKRFVSRPLLRIHQRTHTGVKPYSCNVCGKTFTQRCTLTVHRRYHTGETPYGCQVCPKAFVSKNLLKAHLKTHEKQMSVGCCAVAGQLY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01449804;
90% Identity: iTF_01449804;
80% Identity: -