Tpod023982.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- RHOBTB1
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000007.1:9695127-9718730[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-08 1.6e-05 26.9 0.0 3 44 243 283 241 304 0.83 2 3 0.00094 0.83 11.7 0.0 54 99 390 442 371 452 0.78 3 3 7.5e-17 6.6e-14 53.8 0.0 5 106 476 576 473 580 0.92
Sequence Information
- Coding Sequence
- ATGGATAATGAACAACCTCACCAGGAGCTGGTGAAATGTGTGGTGGTTGGCGACACCGCAGTCGGCAAGACCCGTCTCATATCTGCTGACAACACACGTGCCTACAGTGTGGGCAATCGACCAGTACCGCATCTACAAGGACGTGTTGGAGAGGTCATGGGAAATGGTGGACGGGTGAATGTGTCGCTCCGGCTATGGGATACGTTCGGGGACCACGAAAAGGACAGGAGGTTTGCCTACGGCAGGTCAGACGTGGTGCTGCTATGTTTCTCCATCACCAACCCGGTCTCTCTGCGGAACTGCAAAGCGATGTGGTACCCGGAAATCCGGAGGTTTTGCCCCCAGACACCGATACTGCTGGTGGGCTGCAAGAGCGACCTTCGATATATGTACAAGGACGAAGCCTACCTCAGCTTCTTCCGAGACAGAAGTCCTTTCGTTAGGCCGACCAGAAAGAGTGACCTGTTGATGCCGGATCAGGCCAGAGCCATAGCCAAGGAACTCGGGATATACTACTACGAGACAAGTGTGCTCACTTACTACGGCGTCAATGACGTGTTTGAGAACGCCATCAGAGCAGCGCTCATTGCGCGCAGGGGGCAGAGGTTCTGGATGACCAACCTCAAGAAAGTTCAAAGGCCCCTATTACAGGCACCGTTCCTGCCTCCCAAGCCCGTACCGGCCGAGCTGTACATCGCGGGCTCTACGTACACCGAGAACATGCAGACCCTGTGGCTGACACAGACGTACACAGACATCATCCTGGTGGCGGGCAGCGTGGGTTTCTCCGCCCACAGGTTCATGCTAGCGGCCGCCTCGCCGGCGTTCCACAGACTGCTCACCATGGACCTCACCTCTGACATGGGTGCTCGTAGTTCCAGCGAGTCCAGCATGGTGAGCACTTTCGGGGAGGCCACCGCGGGGGACTTCAACGATGACACAGAGTACCTCATCCGCCAGTCGGACAACTACTTCAAACCATCCAGAGTGTGGGAACAATTGAAGAGACGGTCCAGTTGCCAAGTGTTGTCCACCGACAGCAACAAGAAGATTGGAGTATCCAAGGACTTGAACCATCCAGCATTCCAGACCATCCGTGTTGAGCAGTGCGAGAGTTTTGATACGCACCGTGGACGCCCAACCAGCTCCGTGCAGACGGTATTGACGCTCTCCAAGTTGGTTACTCCTCAAGCTATGCAGCAATGTCTTCAGTTTCTTTACACCGGAACAATCGACAGTCGCTTCTGTGAACTACAGACCGTGCCACTAGGACTCTTATTGGAAATCCGCCAAGCCGCGGAGTTTCTGGATCTACCAGAATTGTTGGTGTTTGTCACTAACATTCATTCACACGAAGAATTCCTCAACACAGACTTGAAGCAGCAGTACAGGAAGGCAGTTCGCCAGCGGTTACAAGACCTCTGTCTGTGTCAAGGACTGTTCTCGGACATTGTTTTCCAACTGGACGACGGTTCGTTTGCTGCTCACCGCCCCATGCTCATGGCTCGCTGTGACATGATGAAGGCAATGTTCTCTGGAGATTTCAGGGAGAGCAATGCCAAAGTTATCCTGTTTCCTGGCGTCCATGAGGACACATTCCACAAGCTGCTGGTGTACTTGTACATAGACGATGTTCCGACCATTTCTCCGGCGAGATGCCTGGGACTACTGGAACTAGCCAATAGACTGTGTCTTCCCCGACTAGTGAACCTAGTCGAGCGACGGGTGGTGGAGGAACTCAGCAGGATCAGTGCTGCCGAGGGCAGTGATGTGGTCGAACATTGCTTGCGACTGCTCGAACCTTGCAAGcTGCACAATGCAGACCAATTAGCGGACTGGTGCATGAACCACCTGTGCACCAATTACAACAAACTTTGCAAGATGTCTCCCAAACTCCTCAAGGGACTCCACCCAGAGAACCAGGAGTATTTGTGTGAACACCGATGGCCTCCAGTATGGTATCTTAAGGACTTCGACTATTATCAGAAGTGCGCGCAGGAGCGAGCTCAGGAAGATAAGCCTTTACTGAAGCGAAGTCGACACAACTCGGGCTGCCTCTGCTTCACGAGCAACAAGTCTCGGCGAGGAGGAGTCAGTGAGAGACCGTTACTGGCCGGCAACACCGTATGA
- Protein Sequence
- MDNEQPHQELVKCVVVGDTAVGKTRLISADNTRAYSVGNRPVPHLQGRVGEVMGNGGRVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSITNPVSLRNCKAMWYPEIRRFCPQTPILLVGCKSDLRYMYKDEAYLSFFRDRSPFVRPTRKSDLLMPDQARAIAKELGIYYYETSVLTYYGVNDVFENAIRAALIARRGQRFWMTNLKKVQRPLLQAPFLPPKPVPAELYIAGSTYTENMQTLWLTQTYTDIILVAGSVGFSAHRFMLAAASPAFHRLLTMDLTSDMGARSSSESSMVSTFGEATAGDFNDDTEYLIRQSDNYFKPSRVWEQLKRRSSCQVLSTDSNKKIGVSKDLNHPAFQTIRVEQCESFDTHRGRPTSSVQTVLTLSKLVTPQAMQQCLQFLYTGTIDSRFCELQTVPLGLLLEIRQAAEFLDLPELLVFVTNIHSHEEFLNTDLKQQYRKAVRQRLQDLCLCQGLFSDIVFQLDDGSFAAHRPMLMARCDMMKAMFSGDFRESNAKVILFPGVHEDTFHKLLVYLYIDDVPTISPARCLGLLELANRLCLPRLVNLVERRVVEELSRISAAEGSDVVEHCLRLLEPCKLHNADQLADWCMNHLCTNYNKLCKMSPKLLKGLHPENQEYLCEHRWPPVWYLKDFDYYQKCAQERAQEDKPLLKRSRHNSGCLCFTSNKSRRGGVSERPLLAGNTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894919;
- 90% Identity
- iTF_01447666; iTF_01448666;
- 80% Identity
- -