Lnig021538.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- RHOBTB1
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001999.1:12587-25990[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.6e-09 1.3e-06 29.7 0.1 2 44 209 250 208 269 0.86 2 3 0.0049 1.8 10.0 0.0 52 99 355 409 343 420 0.78 3 3 2.6e-17 9.4e-15 55.9 0.0 7 105 445 542 440 546 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTCGCCCGATGTGCAGTTGATGTTCACGATGCAATGGTGTTGGAGAGGTCCTGGGAGGTGGTGGACGGAGTCAACGTGTCGCTGCGGCTCTGGGACACATTTGGGGACCATGAGAAGGACAGGCGCTTTGCCTACGGCAGATCGGACGTGGTGCTGCTGTGCTTCTCGCTGACCAACCCCGTGTCGCTGCGGAACTGCAAGGCCATGTGGTATCCGGAGATCCGACGCTTCTGTCCGCAGACCCCCATCATCCTCGTCGGATGCAAGAACGATCTCCGGTTCATGTACCGCGACGAGACGTACCTCGGATTCTTCAGGGACCACAGCCCCTTCGTCAGGGCAACTCGTAAGACGGACCTGGTGATGCCGGACCAGGCCCgagccattgccaaggagctcgGCATCTACTACTACGAGACCAGCGTGCTCACGTACTACGGAGTCAACGAGGTGTTCGAGAACGCCATCCGCGCGGCTCTCATCGCGAGGCGAGCGCAACGGTTCTGGATCACAAACCTGAAGAAGGTTCAGCGGCCGTTGTTACAGGCGCCGTTCAAGCCGCCGAAGCCGATGCTGCCGGAAGTGTACATCGCCGGCAGCTCGTACGTGGAGCACATGCACCAGCTGTGGCTGCAGCAAGCGTACACTGATCTCGTGCTTGTGGCGGGCAGCGTCGGGTTCTCGGCCCACCGCTTCGTCCTCGCTGCCGCCTCGCCCACCTTCCACCGCCTCCTCGTCATGGACCTCTCCAGCGACATGGGGGCACGGAGTTCCAGTGAATCCAGCATGGTCAGTACGTTCGGTGAAGCAACGGTCGGAGATTTTAACGACGACACTGAACTTCTCATTCGCCAATCAGAAAACTACCTCAAGCCTTCTCGAGTGTGGGAGCAGTTGAAGAGGCGGTCCAGCTGTCAAGTGCTCTCTACAGACTCCAACAAGCGGCTCGGTGTCTCCCGAGAACTCAATCATCCGGCATTCCAGACGATAAGGATTGAGCAGTGTGACGGCGTGGACATGCAGCGAGGCCTGGCCAGCAGCACGCTGCAGACGGTGGTGACTTTGTCCAAGCTGGTCACTCCGCAAGCCATCCAGCAGTGTCTACAGTTCCTCTACACGGGCTCCATCGACAGCCGCTTCTGCAAGCTGCAGacTGTACCACTGGGATTGCTCTTGGAAATCCGGCAAGCTGCAGAGTTCCTGGATCTTCCGGAACTCCTGTTGTTCGTTAGCAACATCCAGGACCACGAAGAATTCCTCAACACGGACCTCAAACAGAAATACAGGAAGGCGGTGAGATTACGGATGCAGGACCTGTGTCTCGGCCAAGGCCTCTTCTCCGACATCGTCTTCCAACTGGACGACGGCTCGTACGCGGCGCACCGGCCGATGCTGATGGCACGGTGCGACATGATGAAGGCCATGTTCTCCGGGGACTTCAGAGAGAGCAACGCCAAAGTGATCCTGTTCCCGGGCGTGCGCGAGGACACGTTCCACAAGCTGCTGGTGTTCCTGTACACGGACGACGTTCCGTTCGTGGAGCCGGAGCGCTGCCTGGACCTGCTGGAGCTCGGCAACCGGCTGTGTCTGCCGAGGCTGGTCAACCTCGTGGAGAGGCGGGTGGTCGAGGAGATGACCAGGCTCTCCACCGTCGAGCTCTCCGACGTCGTGGAGCACTGTCTCAGGCTGCTGGAACCTTGCAAGCTGCACAATGCTGATCAGCTGGCAGACTGGTGCATGAACTATCTCTGCACCAACTACAACAAGCTGTGCAAGATGTCTCCCAAGCTGCTGCGCGGGTTGCATCCCGAGAATCAGGAGTATCTCAGTGAACATCGCTGGCCGCCGGTCTGGTATTTGAAGGACTACGACAACTACCAGAAGAGCACGATGGAACGCGAGAAAGAAGACAAACCGTCGCTGAAGCGCGGCCGACACAACTCCGGCTGCCTCTGCTTCTCCGGCGGCAAGCGTCGAGAGAGCGATCGAGCCTTTCTCAGCGGCGCCTCCACCGTATGA
- Protein Sequence
- MEVARCAVDVHDAMVLERSWEVVDGVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSLTNPVSLRNCKAMWYPEIRRFCPQTPIILVGCKNDLRFMYRDETYLGFFRDHSPFVRATRKTDLVMPDQARAIAKELGIYYYETSVLTYYGVNEVFENAIRAALIARRAQRFWITNLKKVQRPLLQAPFKPPKPMLPEVYIAGSSYVEHMHQLWLQQAYTDLVLVAGSVGFSAHRFVLAAASPTFHRLLVMDLSSDMGARSSSESSMVSTFGEATVGDFNDDTELLIRQSENYLKPSRVWEQLKRRSSCQVLSTDSNKRLGVSRELNHPAFQTIRIEQCDGVDMQRGLASSTLQTVVTLSKLVTPQAIQQCLQFLYTGSIDSRFCKLQTVPLGLLLEIRQAAEFLDLPELLLFVSNIQDHEEFLNTDLKQKYRKAVRLRMQDLCLGQGLFSDIVFQLDDGSYAAHRPMLMARCDMMKAMFSGDFRESNAKVILFPGVREDTFHKLLVFLYTDDVPFVEPERCLDLLELGNRLCLPRLVNLVERRVVEEMTRLSTVELSDVVEHCLRLLEPCKLHNADQLADWCMNYLCTNYNKLCKMSPKLLRGLHPENQEYLSEHRWPPVWYLKDYDNYQKSTMEREKEDKPSLKRGRHNSGCLCFSGGKRRESDRAFLSGASTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243367; iTF_00242327; iTF_00995304; iTF_00821086; iTF_01567048; iTF_01449706; iTF_01447666; iTF_01448666; iTF_00370286; iTF_01565691;
- 90% Identity
- iTF_00242327;
- 80% Identity
- -