Tpod047635.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- lilli
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000011.1:55436234-55457576[+]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-08 0.0018 19.5 0.0 44 116 65 138 57 150 0.71 2 2 2.4e-08 0.0016 19.7 0.0 324 381 194 250 188 261 0.88
Sequence Information
- Coding Sequence
- ATGTCCGGCGGGTCGGCACCGGTGACGCGGTTGGCGACGAGTAGTCGCCCATTGTTTCTAGCGCTCTCTTGTGGGGTTTTACTCACGCCATTGTTTGCCAAGAATTGCGGCTCTCACATGTCTGGTGTTGCCGCCTTCGAAAATATGAGGAGCTTGCATGATGTGTATAGACAGGTGACACCGTCGTCCACCGACTTGGTGACGCACCAAATTCAGAGGCGCCTGGGCAACTACGACATTGTCAAGGATCTGTTCGAGGACGTCCCGAAGTTGCTGGGAATAGACTCCAACCATCCTCCGGCCAGTCCCGCCCCCTTCCCGTCCCAGGCCTCCGCCGCCTCCCGCGCTCAGGGCGAGTTCAAGAAGCCGTCCGCCGCCCATCACAACAACCATCACGGCCACCACAGCGCTCCCCGGGGTGGGTTCGTGAAGCCGACGGACGGTAAACCGCCCTATGGGGGCCGGGGCGGGTACCCCGGCCAGCCCGTGAAGCACGGGGTCCCCGCGAGCAACGACCATCGGGCCAATGGTATCGTTCCACCCAAGGGGCCACCAGTCGGGGGCAGCAGGATTCATCAGACCAGCAGGAGTTTACCCAGGCTTCATGTCGGACAGGGGCAGAGGGATTCTTTGAGTGGCGGACAGCCGGAGCTCGAGAACATCCTCAAGGAGATGAAGTCTGTGATGGTGACTCCCCTGACTGGAATAGCCACCCCTCGCAAGGAGCCGGAGAGCAAGTTCATTTTCAACCCTCACCTGGCTGGCTATATGAATGGCATGCCTCCTCCTGCTCAAGAACATAGAAGCCGTAAGTTGCTATCTACTCTTTGGATATtatga
- Protein Sequence
- MSGGSAPVTRLATSSRPLFLALSCGVLLTPLFAKNCGSHMSGVAAFENMRSLHDVYRQVTPSSTDLVTHQIQRRLGNYDIVKDLFEDVPKLLGIDSNHPPASPAPFPSQASAASRAQGEFKKPSAAHHNNHHGHHSAPRGGFVKPTDGKPPYGGRGGYPGQPVKHGVPASNDHRANGIVPPKGPPVGGSRIHQTSRSLPRLHVGQGQRDSLSGGQPELENILKEMKSVMVTPLTGIATPRKEPESKFIFNPHLAGYMNGMPPPAQEHRSRKLLSTLWIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447574;
- 90% Identity
- iTF_01447574;
- 80% Identity
- -