Tgen000566.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- lilli
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000014.1:764418-787348[-]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-08 0.0026 19.1 0.0 44 116 85 158 82 170 0.69 2 2 2.7e-08 0.002 19.5 0.0 324 381 214 270 208 281 0.88
Sequence Information
- Coding Sequence
- atggaaatactcaagaagatcagCATCAACTGGAGAGACAGAAGGCTGACTGCAAACCTGTACCTGTGGCATCAAGTtaaggtgaggctgaatgatggagagaccaacatCGTAGGAATAGAAAAAGGAGTGAGGCAGGGATACTGTTTGTTAGCCAGTTTGTTCAACTTAAATGGAGAATGGCTGGTCATAGAGGCCTTGGAGAGACTTGGCAATTTCGGGATAGGGGGACGTGTGACACCGTCGTCCACCGACTTGGTGACGCACCAAATTCAGAGGCGCCTGGGCAACTACGACATTGTCAAGGACCTGTTCGAGGACGTCCCGAAGTTGCTGGGAATAGACTCCAACCATCCTCCGGCCAGTCCCGCCCCCTTCCCGTCCCAGGCCTCCGCCGCCTCCCGCGCTCAGGGCGAGTTCAAGAAGCCGTCCGCCGCCCACCACAACAACCATCACGGCCACCACAGCGCTCCCCGGGGTGGGTTCGTGAAGCCGACGGACGGTAAACCGCCCTATGGGGGCCGGGGCGGGTACCCCGGCCAGCCCGTGAAGCACGGGGTCCCCGCGAGCAACGACCATCGGGCCAATGGTATCGTTCCACCCAAGGGGCCACCAGTCGGGGGCAGCAGGATTCATCAGACCAGCAGGAGTTTACCCAGGCTTCATGTCGGACAGGGGCAGAGGGATTCTTTGAGTGGCGGACAGCCGGAGCTCGAGAACATCCTCAAGGAGATGAAGTCTGTGATGGTGACTCCCCTGACTGGAATAGCCACCCCTCGCAAGGAGCCGGAGAGCAAGTTCATTTTCAACCCTCACCTGGCTGGCTATATGAATGGCATGCCTCCTCCTGCTCAAGAACATAGAAGCCGTAAGTTGCTATCTACTCTTTGGATATTAtga
- Protein Sequence
- MEILKKISINWRDRRLTANLYLWHQVKVRLNDGETNIVGIEKGVRQGYCLLASLFNLNGEWLVIEALERLGNFGIGGRVTPSSTDLVTHQIQRRLGNYDIVKDLFEDVPKLLGIDSNHPPASPAPFPSQASAASRAQGEFKKPSAAHHNNHHGHHSAPRGGFVKPTDGKPPYGGRGGYPGQPVKHGVPASNDHRANGIVPPKGPPVGGSRIHQTSRSLPRLHVGQGQRDSLSGGQPELENILKEMKSVMVTPLTGIATPRKEPESKFIFNPHLAGYMNGMPPPAQEHRSRKLLSTLWIL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449623;
- 90% Identity
- iTF_01449623;
- 80% Identity
- -