Basic Information

Insect: Timema monikensis
Gene Symbol: ECU06_1150
Assembly: GCA_902151445.1
Location: CABFVZ010001681.1:78130-82025[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3e-05 0.0027 20.1 2.3 1 23 148 170 137 170 0.99

2 14 0.00065 0.13 14.8 1.1 2 23 176 197 175 197 0.96

3 14 2.1e-05 0.0043 19.5 2.0 3 23 205 226 204 226 0.95

4 14 0.00026 0.053 16.1 6.0 1 23 232 254 232 254 0.98

5 14 0.00013 0.026 17.0 2.2 1 23 264 287 264 287 0.94

6 14 0.25 51 6.7 4.9 1 23 294 316 294 316 0.93

7 14 0.012 2.5 10.8 0.4 1 20 322 341 322 342 0.96

8 14 3.1e-05 0.0065 18.9 1.8 1 23 350 373 350 373 0.93

9 14 8.6e-07 0.00018 23.9 2.2 1 23 389 411 389 411 0.98

10 14 0.017 3.5 10.3 0.5 1 23 417 440 417 440 0.91

11 14 4.4e-05 0.0091 18.5 0.6 1 23 460 482 460 482 0.98

12 14 7.4e-05 0.015 17.8 0.4 1 23 488 510 488 510 0.99

13 14 2.2e-07 4.6e-05 25.7 3.2 1 23 516 538 516 538 0.98

14 14 2.7e-06 0.00055 22.3 0.5 1 23 544 567 544 567 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3e-05	0.0027	20.1	2.3	1	23	148	170	137	170	0.99
2	14	0.00065	0.13	14.8	1.1	2	23	176	197	175	197	0.96
3	14	2.1e-05	0.0043	19.5	2.0	3	23	205	226	204	226	0.95
4	14	0.00026	0.053	16.1	6.0	1	23	232	254	232	254	0.98
5	14	0.00013	0.026	17.0	2.2	1	23	264	287	264	287	0.94
6	14	0.25	51	6.7	4.9	1	23	294	316	294	316	0.93
7	14	0.012	2.5	10.8	0.4	1	20	322	341	322	342	0.96
8	14	3.1e-05	0.0065	18.9	1.8	1	23	350	373	350	373	0.93
9	14	8.6e-07	0.00018	23.9	2.2	1	23	389	411	389	411	0.98
10	14	0.017	3.5	10.3	0.5	1	23	417	440	417	440	0.91
11	14	4.4e-05	0.0091	18.5	0.6	1	23	460	482	460	482	0.98
12	14	7.4e-05	0.015	17.8	0.4	1	23	488	510	488	510	0.99
13	14	2.2e-07	4.6e-05	25.7	3.2	1	23	516	538	516	538	0.98
14	14	2.7e-06	0.00055	22.3	0.5	1	23	544	567	544	567	0.96

Sequence Information

Coding Sequence: ATGCATGTGACCAGTGCGGTCAACAATTCTCCCAGTTTGGTGGACTTTGGTGGGACATTCGTATGGTCCATGAGAGATGAAGGGATTATGTGTGCCACATCTGTGGCAAAGCCTTCTTTGAAAAAGTTCCTCAAGATTACCACATGTGCATCCACACTGAGAAGCAAGTGCACTCTGCCAGCTGCTCAAAAGCAGTACATATTGAAAGAGGAACCAAGATTCGGGGAATGTGTTTTCAACCCGTGTAGCAACTTACAAGAACATGGTGAAACAAAATTCATTGTCGAAACAATATGCACACAAAACATATCTAGTCCTCGACGAGACGATGAACTGGCCACCCAGAGTGTGGTGAAACTTTCCAAAACTAGGAGAAAGAAGATCATACCTCAGTCATGCGACAGTATGAAAGTTTACTCTCCTCGGTCGGATAGACAAAGACATACTTGCAATACATGTGGTCGAAGTTATATGACTAGGAAGTCATTGAAGGAACACATCAAGAAACATTCCCAAGAACCTGTCAAATGTGACTTGTGTGGTCGGATGTATAAGAACGAGCATGTGTTGAAAACCCATATCAGCTTGCACACAGGAGCCCAGCCacgaccatgcagccactgtgACAAGGCCTTCTTCTTTGCTTCATCCTTGAAGCAACATATGAAGCAGGAACATGGAGAGTTCCTTTTAtttaagtgtgatgtttgtggaAAAACATTCAACTTAAAATGTCACCTTAAGTCCCATAACGAGACTCACAATCATGATAAGATTGCACCCATTCTCCACATATGCCAAATGTGTGGTAAGACATTCAAAAAGCTGCAGAGCCTAAAGATACATGAGAAGCAGATACATCTAGGTGTGCCCAAACAGCACATATGTGAATGTTGTGGTGCCATGTTCCATAACATCAGCAAGCTCAAGCTGCACATGCTGAGACACACAGGTGACCGTCCCTTCACCTGTGAGGCATGTGGTCTTCGTTTTGGCACCAAGCATCGCCTCAACAACCACCTAGTGTGCCACTCTGAAGAACGGCCTCATACCTGTGGTGTTTGCGGTAAGACCTTCAAGAGGCAGCGGAATTTAGGCATGCATGAGCAGAACTCGCATGGAATCTTTTCTCAAGGCATGGGAAAGGAGAAGGTTGTGATCAGCTTTCCATGCCAGGTGTGTGATAAACAGTTTACCACAAAGCATAAGCTTGCCGCACATATGAGGAACCACACTGGGGAACGCCCCTTTACCTGTGAGACTTGCGGCCGCGAGTATAAAACCGCTGCAGGTCTAGGTTTCCACACAAAGACATCACACATGGTTTGGGAGGGCAAGCCAATGTCAAAGTACATTCAGGATGCAATAAAGAAAGACTTCCCTTGCAAGATTTGTGGGAAGGTGCTCTCCTCCAGGGTGGGCCGGGAACATCACATCCGCACCCATACCGGCGAGCGTCCATACAAATGCAAACTGTGTGAGCTGGCGCTCAAGACACCTGCCCAATTGCACGCTCACATGCAAATCCACTCTGACAGCAAACCCTTCCCATGCACATACTGTGACAAGACTTTCCGCCGGAGGCCACACCTTGTAAGCCATCTTCGCACACATACAGGAGAAAAACCCTACTCTTGTGATGTTTGTGGGCGGGCTTTTTCGCAGAAGGGGGACATGAAAAAGCACCGTGAGAAGATCCACAACATGCCAGGAATGGTGGAGAAAATCTCGCTCGTTTCATTGTGA
Protein Sequence: MHVTSAVNNSPSLVDFGGTFVWSMRDEGIMCATSVAKPSLKKFLKITTCASTLRSKCTLPAAQKQYILKEEPRFGECVFNPCSNLQEHGETKFIVETICTQNISSPRRDDELATQSVVKLSKTRRKKIIPQSCDSMKVYSPRSDRQRHTCNTCGRSYMTRKSLKEHIKKHSQEPVKCDLCGRMYKNEHVLKTHISLHTGAQPRPCSHCDKAFFFASSLKQHMKQEHGEFLLFKCDVCGKTFNLKCHLKSHNETHNHDKIAPILHICQMCGKTFKKLQSLKIHEKQIHLGVPKQHICECCGAMFHNISKLKLHMLRHTGDRPFTCEACGLRFGTKHRLNNHLVCHSEERPHTCGVCGKTFKRQRNLGMHEQNSHGIFSQGMGKEKVVISFPCQVCDKQFTTKHKLAAHMRNHTGERPFTCETCGREYKTAAGLGFHTKTSHMVWEGKPMSKYIQDAIKKDFPCKICGKVLSSRVGREHHIRTHTGERPYKCKLCELALKTPAQLHAHMQIHSDSKPFPCTYCDKTFRRRPHLVSHLRTHTGEKPYSCDVCGRAFSQKGDMKKHREKIHNMPGMVEKISLVSL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01444996; iTF_01447766;
90% Identity: iTF_01447766;
80% Identity: -