Tbar022593.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_902151455.1
- Location
- CABFWB010001702.1:84387-89891[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.023 5.2 9.9 0.1 1 23 21 43 21 43 0.91 2 18 0.0034 0.76 12.5 0.5 1 23 51 74 51 74 0.92 3 18 0.00056 0.12 15.0 1.0 1 21 74 94 74 97 0.93 4 18 0.0054 1.2 11.9 0.4 1 23 103 125 103 125 0.96 5 18 7.2e-05 0.016 17.8 4.3 1 23 227 249 227 249 0.98 6 18 0.0008 0.18 14.5 1.1 2 23 255 276 254 276 0.96 7 18 2.6e-05 0.0058 19.2 2.0 3 23 284 305 283 305 0.95 8 18 0.00031 0.071 15.8 6.0 1 23 311 333 311 333 0.98 9 18 0.00016 0.035 16.7 2.2 1 23 343 366 343 366 0.94 10 18 0.3 68 6.4 4.9 1 23 373 395 373 395 0.93 11 18 0.015 3.3 10.5 0.4 1 20 401 420 401 421 0.96 12 18 3.8e-05 0.0086 18.6 1.8 1 23 429 452 429 452 0.93 13 18 1e-06 0.00024 23.6 2.2 1 23 468 490 468 490 0.98 14 18 0.021 4.7 10.0 0.5 1 23 496 519 496 519 0.91 15 18 5.4e-05 0.012 18.2 0.6 1 23 539 561 539 561 0.98 16 18 9e-05 0.02 17.5 0.4 1 23 567 589 567 589 0.99 17 18 2.8e-07 6.2e-05 25.4 3.2 1 23 595 617 595 617 0.98 18 18 3.3e-06 0.00074 22.0 0.5 1 23 623 646 623 646 0.96
Sequence Information
- Coding Sequence
- ATGGTCTCTGACAAGATGACTCTTCACTCACACAAGACAACccataaaaacacatttctgTACCCTTGCATCACTTGTGGCATGCAGTTCCAAACTATTTCCAACCTGGCAAGGCACGTCGGTATTCATGAGCATGTTCGATGCAAATCACACACTTGCCAGGTTTgcatcaaaactttcacaataaactCAGAGCTACGCAGGCATGAAGTTAAGCTGCATGCATGTGACCAGTGCGGTCAACAATTCTCACAGTTTAGTGGACTCTGGCGGCACATTTGTCCGGTCCATGAGAGACGCAGGGATTATGTGTGCCACATATGTGGCAAAGCCTACTTTGAAAAAGTCCCTCGAGATGACCACATGCGCATCCACACTGGTGAGCGGGGCTTGACCACAAAGACTTTGAATGCGATATTTGTGGACTTAGTTTCAAGATTGAAAGAGGAACCAAGATTCGGGGAATGTGTTTTCAACCCGTGTAGCAACTTACAAGAACATGGTGAAACAAAATTCATTGTCGAAACAATATGCACACAAAACATATCTAGTCCTCGACGAGACAATGAACTGACCGGCCAGAGTGAGGTGAAACTTTCCAAAACTAGGAGAAAGAAGATCATACCTCAGTCATGTGACAGTATGAAAGTTTATTCTCCTCGGTCGGATAGACAAAGACATACTTGCAATACATGTGGTCGAAGTTATATGACCAGGAAGTCATTGAAGGAACACATCAAGAAACATTCCCAAGAACCTGTTAAATGTGACTTGTGTGGTCGGATGTATAAGAACGAGCATGTCTTGAAAACCCATATCAGCTTGCACACAGGGGCCCAACCACGACCGTGCAGCCACTGTGACAAGGCCTTCTTCTTTGCTTCATCCTTGAAGCAACATATGAAGCAGGAACATGGAGAGTTCCTCTTATTCAAGTGTGATGTTTGTGGAAAAACATTCAACTTAAAATGTCACCTTAAGTCCCATAACGAGACTCACAATCATGATAAGATTGCGCCCATCCTCCACATATGCCAAATGTGTGGTAAGACATTCAAAAAGCTGCAGAGCCTAAAGATACATGAGAAGCAGATCCATCTAGGTGTGCCCAAACAGCACATCTGTGAATGTTGTGGTGCCATGTTCCATAACATCAGCAAGCTCAAGCTGCACATGCTGAGACACACAGGTGACCGCCCCTTCACCTGTGAGGCATGTGGTCTTCGTTTTGGCACCAAGCATCGCCTCAACAACCACCTAGTGTGCCACTCTGAAGAACGGCCTCATACCTGTGGTGTTTGCGGTAAGACCTTCAAGAGGCAGCGCAATTTAGGCATGCATGAGCAGAACTCACATGGAATTTTTTCTCAAGGCATGGGAAAGGAGAAGGTTGTGATCAGCTTTCCATGTCAGGTGTGTGATAAACAGTTTACCACAAAGCATAAGCTTGCCGCGCATATGAGGAACCACACTGGGGAACGCCCCTTTACCTGTGAGACTTGTGGCCGCGAGTATAAAACCGCTGCAGGTCTAGGTTTCCACACAAAGACATCACACATGGTTTGGGAGGGCAAGCCAATGTCAAAGTACATTCAGGATGCAATAAAAAAAGACTTCCCTTGCAAGATTTGTGGGAAGGTGCTCTCCTCCAGGGTGGGGCGGGAACATCACATCCGCACCCATACCGGCGAGCGTCCATACAAATGCAAGCTGTGTGAGCTGGCGCTCAAGACACCTGCCCAATTGCACGCTCACATGCAAATCCACTCTGACAGCAAGCCCTTCCCATGCACATACTGCGACAAGACTTTCCGCCGGAGGCCACACCTTGTAAGCCATCTTCGCACACATACAGGAGAAAAACCCTACTCTTGTGATGTTTGCGGGCGGGCTTTCTCGCAGAAGGGGGACATGAAAAAACACCGGGAGAAGATCCACAACATGCCGGGAATGCACCTCATCAGCTTGAGACAAGTCCTGAGTGCAACCGAGACGACTCGTTCGGAAAATGCCGTACCTTTTCGGCTTCCTCCACTCACCCCCGCCAATACCACAAACGTGTCATTTCCTCAACCCCCATCCCCCAACTTCATCAAGCCCATGCTGCTGCCAGTTGAATAA
- Protein Sequence
- MVSDKMTLHSHKTTHKNTFLYPCITCGMQFQTISNLARHVGIHEHVRCKSHTCQVCIKTFTINSELRRHEVKLHACDQCGQQFSQFSGLWRHICPVHERRRDYVCHICGKAYFEKVPRDDHMRIHTGERGLTTKTLNAIFVDLVSRLKEEPRFGECVFNPCSNLQEHGETKFIVETICTQNISSPRRDNELTGQSEVKLSKTRRKKIIPQSCDSMKVYSPRSDRQRHTCNTCGRSYMTRKSLKEHIKKHSQEPVKCDLCGRMYKNEHVLKTHISLHTGAQPRPCSHCDKAFFFASSLKQHMKQEHGEFLLFKCDVCGKTFNLKCHLKSHNETHNHDKIAPILHICQMCGKTFKKLQSLKIHEKQIHLGVPKQHICECCGAMFHNISKLKLHMLRHTGDRPFTCEACGLRFGTKHRLNNHLVCHSEERPHTCGVCGKTFKRQRNLGMHEQNSHGIFSQGMGKEKVVISFPCQVCDKQFTTKHKLAAHMRNHTGERPFTCETCGREYKTAAGLGFHTKTSHMVWEGKPMSKYIQDAIKKDFPCKICGKVLSSRVGREHHIRTHTGERPYKCKLCELALKTPAQLHAHMQIHSDSKPFPCTYCDKTFRRRPHLVSHLRTHTGEKPYSCDVCGRAFSQKGDMKKHREKIHNMPGMHLISLRQVLSATETTRSENAVPFRLPPLTPANTTNVSFPQPPSPNFIKPMLLPVE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448798;
- 90% Identity
- -
- 80% Identity
- -