Basic Information

Insect: Timema genevievae
Gene Symbol: ECU06_1150
Assembly: GCA_902155825.1
Location: CABFWO010000672.1:244280-249100[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.4 4.5e+02 3.6 0.6 6 20 47 61 44 63 0.90

2 16 0.037 6.9 9.3 0.0 4 22 112 130 112 130 0.92

3 16 6.8e-05 0.013 17.9 4.3 1 23 224 246 224 246 0.98

4 16 0.00076 0.14 14.6 1.1 2 23 252 273 251 273 0.96

5 16 2.4e-05 0.0046 19.3 2.0 3 23 281 302 280 302 0.95

6 16 0.0003 0.056 15.9 6.0 1 23 308 330 308 330 0.98

7 16 0.00015 0.028 16.8 2.2 1 23 340 363 340 363 0.94

8 16 0.29 53 6.5 4.9 1 23 370 392 370 392 0.93

9 16 0.014 2.6 10.6 0.4 1 20 398 417 398 418 0.96

10 16 3.6e-05 0.0068 18.7 1.8 1 23 426 449 426 449 0.93

11 16 9.9e-07 0.00019 23.7 2.2 1 23 465 487 465 487 0.98

12 16 0.02 3.7 10.1 0.5 1 23 493 516 493 516 0.91

13 16 5.1e-05 0.0096 18.3 0.6 1 23 536 558 536 558 0.98

14 16 8.6e-05 0.016 17.6 0.4 1 23 564 586 564 586 0.99

15 16 2.6e-07 4.9e-05 25.5 3.2 1 23 592 614 592 614 0.98

16 16 3.1e-06 0.00058 22.1 0.5 1 23 620 643 620 643 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.4	4.5e+02	3.6	0.6	6	20	47	61	44	63	0.90
2	16	0.037	6.9	9.3	0.0	4	22	112	130	112	130	0.92
3	16	6.8e-05	0.013	17.9	4.3	1	23	224	246	224	246	0.98
4	16	0.00076	0.14	14.6	1.1	2	23	252	273	251	273	0.96
5	16	2.4e-05	0.0046	19.3	2.0	3	23	281	302	280	302	0.95
6	16	0.0003	0.056	15.9	6.0	1	23	308	330	308	330	0.98
7	16	0.00015	0.028	16.8	2.2	1	23	340	363	340	363	0.94
8	16	0.29	53	6.5	4.9	1	23	370	392	370	392	0.93
9	16	0.014	2.6	10.6	0.4	1	20	398	417	398	418	0.96
10	16	3.6e-05	0.0068	18.7	1.8	1	23	426	449	426	449	0.93
11	16	9.9e-07	0.00019	23.7	2.2	1	23	465	487	465	487	0.98
12	16	0.02	3.7	10.1	0.5	1	23	493	516	493	516	0.91
13	16	5.1e-05	0.0096	18.3	0.6	1	23	536	558	536	558	0.98
14	16	8.6e-05	0.016	17.6	0.4	1	23	564	586	564	586	0.99
15	16	2.6e-07	4.9e-05	25.5	3.2	1	23	592	614	592	614	0.98
16	16	3.1e-06	0.00058	22.1	0.5	1	23	620	643	620	643	0.96

Sequence Information

Coding Sequence: ATGAAAGATTTTGGGGAGAAGGCTGCCCATGACAGTCACCAGTACAGACATTTGGCAGAAGACCCTTTGCCTGCAACAAGTGTGACCAGGCTTTCCCCACCCGACCGCAATTCCACATCCATCGGAAGACACGTGTTTTGTTCAAAGGAATTTAATCACGAATCAGGGTTAGAAGGACACACATGTGAAAGTGCCAAAGAGGACATGACAAGACCATCCTCTACTGAAGTGCATGAAAGAACCGCTTGTATATATCCTTTGAATGTGTGTAAGAAGAGGAAAGATGGAGTTGAGAACAGCATGATTGATGTTAAAGACAAAGCATATGAGAGTCCAGAGTGTGGGAAGGTGTCTGTCACAAAACAATCTTTGAAATACCACCAAATTACCCTCACACCTCTCTGCACTGTGGCCAGCAATTTTGTGAAATTGAAAGAGGAACCAAGATTCGGGGAATGTGTTTTCAACCCATGTAGCAACTTACAAGAACATggtgaaacaaaatttattgtCGAAACAATATGCACGCAAAACATATCTAGTCCTCAACGAGACAATGAACTGACCGGCCAGAGTGTGGTGAAACTTTCCAAAACTAGGAGAAAGAAGATCATACCTCAGTCATGTGACAGTATGAAAGTTTATTCTCCTCGGTCGGATAGACAAAGACATACTTGCAATACATGTGGTCGAAGTTATATGACCAGGAAGTCATTGAAGGAACACATCAAGAAACATTCCCAAGAACCTGTTAAATGTGACTTGTGTGGTCGGATGTATAAGAACGAGCATGTCTTGAAAACCCATATCAGCTTGCACACAGGGGCCCAGCCacgaccatgcagccactgtgACAAAGCCTTCTTCTTTGCTTCATCCTTGAAGCAACATATGAAGCAGGAACATGGAGAGTTCCTCTTGTTCAAGTGTGATGTTTGTGGAAAAACATTCAACTTAAAATGTCACCTTAAGTCCCATAACGAGACTCACAATCATGATAAGATTGCGCCCATCCTCCACATATGCCAAATGTGTGGTAAGACATTCAAAAAGCTGCAGAGCCTAAAGATACATGAGAAGCAGATCCATCTAGGTGTGCCCAAACAGCACATCTGTGAATGTTGTGGTGCCATGTTCCATAACATCAGCAAGCTCAAGTTACACATGCTGAGACACACAGGTGATCGCCCCTTCACTTGTGAAGCATGTGGTCTTCGTTTTGGCACCAAGCATCGCCTCAACAACCATTTAGTGTGCCACTCTGAAGAACGGCCTCATACCTGTGGTGTTTGCGGTAAGACCTTCAAGAGGCAGCGCAATTTAGGCATGCATGAGCAGAACTCACATGGAATTTTTTCTCAAGGCATGGGAAAGGAGAAGGTTGTGATCAGCTTTCCATGTCAGGTGTGTGATAAACAGTTTACCACAAAGCATAAGCTTGCCGCGCATATGAGGAACCACACTGGGGAACGCCCCTTTACCTGCGAGACTTGTGGCCGCGAGTATAAAACCGCTGCAGGTCTAGGTTTCCACACAAAGACATCACACATGGTTTGGGAGGGCAAGCCAATGTCAAAGTACATTCAGGATGCAATAAAAAAAGACTTCCCTTGCAAGATTTGTGGGAAGGTTCTCTCCTCCAGGGTGGGGCGGGAACATCACATTCGCACCCATACCGGCGAGCGTCCATATAAATGCAAGCTGTGTGAGCTGGCGCTCAAGACGCCTGCCCAATTGCACGCTCACATGCAAATCCACTCTGACAGCAAGCCCTTCCCATGCACATACTGCGACAAGACTTTCCGCCGGAGGCCACACCTTGTAAGCCATCTTCGCACACATACAGGAGAAAAACCCTATTCTTGTGATGTTTGCGGGCGGGCTTTCTCGCAGAAGGGGGACATGAAAAAACACCGTGAGAAGATCCACAACATGCCAGGAATGGTGGAGAAAATCTCGCTTGTTTCACTGTGA
Protein Sequence: MKDFGEKAAHDSHQYRHLAEDPLPATSVTRLSPPDRNSTSIGRHVFCSKEFNHESGLEGHTCESAKEDMTRPSSTEVHERTACIYPLNVCKKRKDGVENSMIDVKDKAYESPECGKVSVTKQSLKYHQITLTPLCTVASNFVKLKEEPRFGECVFNPCSNLQEHGETKFIVETICTQNISSPQRDNELTGQSVVKLSKTRRKKIIPQSCDSMKVYSPRSDRQRHTCNTCGRSYMTRKSLKEHIKKHSQEPVKCDLCGRMYKNEHVLKTHISLHTGAQPRPCSHCDKAFFFASSLKQHMKQEHGEFLLFKCDVCGKTFNLKCHLKSHNETHNHDKIAPILHICQMCGKTFKKLQSLKIHEKQIHLGVPKQHICECCGAMFHNISKLKLHMLRHTGDRPFTCEACGLRFGTKHRLNNHLVCHSEERPHTCGVCGKTFKRQRNLGMHEQNSHGIFSQGMGKEKVVISFPCQVCDKQFTTKHKLAAHMRNHTGERPFTCETCGREYKTAAGLGFHTKTSHMVWEGKPMSKYIQDAIKKDFPCKICGKVLSSRVGREHHIRTHTGERPYKCKLCELALKTPAQLHAHMQIHSDSKPFPCTYCDKTFRRRPHLVSHLRTHTGEKPYSCDVCGRAFSQKGDMKKHREKIHNMPGMVEKISLVSL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448798;
90% Identity: iTF_01448798;
80% Identity: -