Tmon002704.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000054.1:850921-860269[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0014 0.29 13.7 0.1 2 23 11 32 10 32 0.95 2 29 0.00023 0.047 16.2 4.3 1 23 38 60 38 60 0.97 3 29 0.001 0.21 14.2 0.3 1 23 66 88 66 88 0.98 4 29 1.6e-07 3.4e-05 26.1 1.2 1 23 94 116 94 116 0.98 5 29 3.9e-05 0.0081 18.6 5.2 1 23 121 143 121 143 0.98 6 29 1.2e-05 0.0025 20.2 0.6 1 23 152 174 152 174 0.98 7 29 2.6e-06 0.00054 22.3 0.2 1 23 180 202 180 202 0.98 8 29 3e-06 0.00061 22.2 0.8 1 23 208 230 208 230 0.98 9 29 1.9e-06 0.00039 22.8 1.1 1 21 236 256 236 256 0.96 10 29 6.4e-05 0.013 18.0 2.1 2 23 298 319 297 319 0.96 11 29 0.0054 1.1 11.9 6.9 1 23 325 347 325 347 0.98 12 29 0.37 77 6.1 2.7 1 23 353 375 353 375 0.93 13 29 0.0018 0.37 13.4 1.9 1 23 382 404 382 404 0.97 14 29 5.1e-06 0.001 21.4 0.7 1 23 410 432 410 432 0.98 15 29 4.3e-06 0.00088 21.7 1.4 1 23 437 459 437 459 0.98 16 29 0.018 3.8 10.2 1.9 1 20 466 485 466 487 0.92 17 29 2e-06 0.00041 22.7 0.3 1 23 494 516 494 516 0.98 18 29 3.6e-05 0.0075 18.7 1.3 1 23 522 544 522 544 0.98 19 29 5.4e-06 0.0011 21.3 0.6 1 21 550 570 550 571 0.95 20 29 0.011 2.3 10.9 0.4 2 23 663 684 662 684 0.96 21 29 0.029 6 9.6 3.3 1 23 689 711 689 711 0.97 22 29 0.03 6.2 9.6 0.5 1 23 717 739 717 739 0.98 23 29 0.00029 0.06 15.9 1.3 2 23 746 767 745 767 0.97 24 29 0.18 37 7.1 0.4 1 23 773 796 773 796 0.94 25 29 5e-06 0.001 21.5 1.7 1 23 803 825 803 825 0.96 26 29 0.00056 0.11 15.0 0.2 1 23 830 852 830 852 0.96 27 29 9.8e-05 0.02 17.4 1.6 1 23 858 880 858 880 0.96 28 29 2.5e-06 0.00051 22.4 0.4 1 23 886 908 886 908 0.96 29 29 0.00023 0.047 16.2 2.0 1 23 914 936 914 936 0.98
Sequence Information
- Coding Sequence
- ATGAAAACACATGTATCAAACAAAGCGTTGGTTTGCAAAAGTTGCGATAAAGTGTTCACCGCCGTTAGTCTTTTGGCGAAGCACACGGCGAGTCACACGACAGATAGGCCCTTTCCTTGCGACCTCTGTCGGAAGACTTTCAAACGCAAACATGAACTCGTTAGCCACAAGAAGCAACACGAAGGTGTCAAAGATTTTGTATGTGACATTTGCAGCTATGCGACAGGCCATAAAGCCTCGCTTGCCGTGCACATAAAGAGACACACGTGCGAAGCTCAATTCCCCTGCAACGTCTGCAACCGAAGTTTCTACACAAATTCACAACTTCAGAACCATATAAACACTCACTATGGAAAGAAGCATCAGTGCGAGTTTTGCGGCAAGTCGTTTATCCATAAGTACAACATGTTGATCCACCAGAAATCCCACGACCCGTCGAAAGACATAAGGAAATTCCCATGCGAGATTTGCGGCAAAACTTATCAGCGCAGAAACAAACTCATGATGCACATTCGTCTGCACACGGGAGAGATGCGCTACATATGTGACATATGTGGTAAAAGTGTGACGAGCAGTACGTCCTTGGAGACTCACCGAAGGGTCCACACCGGTGAGAAGCCATTCGTCTGCGACCTTTGTGGGAAAGCGTTCAACTCAAACAACTATCTGAGGGTCCATAAGCGTTCGCACACCGGAGAAAAACCTCACATGTGTAAACAGTGTGGAAAATCATTCACTCAGCGCTCCACACTTGTTGTACATATGAGGTGTTCACCACAATATGGTGGTGAGTGGTGGAATGAAGGTTTGTGTACATCTCCCGAGTCTCCAAGACCCATAAAGGGGGGACCCCCAGTCATAGAAGGTCCGGAAAAAAAATCCGAAACTCTGGAATGCGACACGTGTGGAAAGAGGTGTAAGAGTAAAGCCAACCTTAATTTACACTCGAGAGTTCACGACCCTTCGAAACATCACAAGTGTAAAACTTGCgataaaatatttctggatAAGCACCATCTCGCAAGGCACACGGCCACTCACAACAAAGAGAGGCCGTATGCCTGCGACGTCTGCGACAAAACTTACAAGTGTCCTTTCAGGCTATCAAGTCATAAAAAAGGTCACTGCGAGAAGAAAAAACCACACGTGTGCGATATCTGTGACTACTCGACAATCTACAGGTACTATCTGGAAATCCACAAAAAAAGGCATGCGTCTGACTTTACGTTCAAGTGTGATCTGTGCGGGAAAGGTTATTATACCGCTACCGATCTTAAAAGGCATAGAATGATCCATGACGGGAGTAAACACACATGTGACGTATGTGGTAAAGAGTTTACGATGGATAAAAACCTGAAAGACCATATGAGGATCCATAAATCCAACAGAAGACGTTTCAACTGCGCACTTTGCggtaaaagctatttttatactAGCCAATTAAATGTGCACAACTGTACCAAAGGAGAGGCTGTCAGATACGTCTGTGATGTTTGCGGAAAAACCTTGACGAGTGCGTCGTCCCTTCAGAGCCACCGCCGGCTACACACAGGGGAGAAACCGTTCATGTGTGATATCTGTCTGAAGTCCTTCAACACGGCCACTTACTTGCGCATACACAAGCGCTCACACACGGGGGAGAAGCCCCACGTGTGCAGTCAGTGCGGCAAGTCTTTCACCCAGCGCTCGACGCTTGTCGTTCACTATAGgTGGATGACAGAGAATTATGGTGACCTCACTGaacaattaagaaatatttcaccAGATGTATCATCAGATCACCAAAGTCTTCTGAAGCATTCCCGTAAATCACTGGTAAAGGATCCTCAGGAGTTAACGGTTAGATGTAAAATAGCGGAACGTAAAGGCTCGAACTATTTTAAGGATCCAATAATAGATCAAAATTTAGACCCTTCTAAAATGACCACACGTAATCAGCCCAACAGTCTACGTGTGAAGAAACCTCATGGCACCAAAGGCCCGCTCATTTGCGACACATGTGGTAAGTTGTTCCCATCCGTCAAGAGACTAAACATGCACAGGAAGATTCACACTGACATCCGTTACACTTGCGACATTTGCCTCAAGACTTATAAAAGTATCAGCATGTTTTATACCCACAAGAAATTCcataaaagtttgaaaacataCGACTGTGATGTGTGCGACTACCGTACTCCTTGGAAAGGTAATATGAACAATCATCGCAGGAGACATTTCGGTGAGACTAAAGTTACCTGTGACATGTGTGATAAAGGATTCTACAACAAGTGTGATTTGGAAGAGcacaaaaatattcacacagggaacaaaccttttaaatgcgACATATGTGAATCGCCGTTTTGGTCCAAAAGGAGTCTCTGGGATCATAAAAAAGCACAGCACAACTCAAACTTAAATGAGTTCAAATGCACACAATGTGGCAAAAGCTTTGTTTTCAAGAGCCGGTTAAACAGGCACTTGGAGGCCCATCAGGGGAAACGTTTCATGTGCGACGTTTGCGGCAAATCTGTGACGTCGGACCAGTCTCTGAAGGCTCACAAAACCATCCACACGGATGAGAAGAAATTCCTTTGTGACGTCTGCTCAAAGGCGTTCAACACAACACAATCCTTAAAACTTCACAGACGTACGCATACAGGCGAAAAGCCGTACCTGTGCAAGGAATGTGGCAAGGCATTCACCCAGCGCTCGACGCTTGTTGTCCATGCTCGTTACCACTCTGGGGAACGCCCGTACATCTGCCACCTATGTTCCAAAGGTTTTGTTGCAAAGACCCACTTGAACGCTCACATTGAAAAACACAGCTGA
- Protein Sequence
- MKTHVSNKALVCKSCDKVFTAVSLLAKHTASHTTDRPFPCDLCRKTFKRKHELVSHKKQHEGVKDFVCDICSYATGHKASLAVHIKRHTCEAQFPCNVCNRSFYTNSQLQNHINTHYGKKHQCEFCGKSFIHKYNMLIHQKSHDPSKDIRKFPCEICGKTYQRRNKLMMHIRLHTGEMRYICDICGKSVTSSTSLETHRRVHTGEKPFVCDLCGKAFNSNNYLRVHKRSHTGEKPHMCKQCGKSFTQRSTLVVHMRCSPQYGGEWWNEGLCTSPESPRPIKGGPPVIEGPEKKSETLECDTCGKRCKSKANLNLHSRVHDPSKHHKCKTCDKIFLDKHHLARHTATHNKERPYACDVCDKTYKCPFRLSSHKKGHCEKKKPHVCDICDYSTIYRYYLEIHKKRHASDFTFKCDLCGKGYYTATDLKRHRMIHDGSKHTCDVCGKEFTMDKNLKDHMRIHKSNRRRFNCALCGKSYFYTSQLNVHNCTKGEAVRYVCDVCGKTLTSASSLQSHRRLHTGEKPFMCDICLKSFNTATYLRIHKRSHTGEKPHVCSQCGKSFTQRSTLVVHYRWMTENYGDLTEQLRNISPDVSSDHQSLLKHSRKSLVKDPQELTVRCKIAERKGSNYFKDPIIDQNLDPSKMTTRNQPNSLRVKKPHGTKGPLICDTCGKLFPSVKRLNMHRKIHTDIRYTCDICLKTYKSISMFYTHKKFHKSLKTYDCDVCDYRTPWKGNMNNHRRRHFGETKVTCDMCDKGFYNKCDLEEHKNIHTGNKPFKCDICESPFWSKRSLWDHKKAQHNSNLNEFKCTQCGKSFVFKSRLNRHLEAHQGKRFMCDVCGKSVTSDQSLKAHKTIHTDEKKFLCDVCSKAFNTTQSLKLHRRTHTGEKPYLCKECGKAFTQRSTLVVHARYHSGERPYICHLCSKGFVAKTHLNAHIEKHS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450786; iTF_01446803; iTF_01444981;
- 90% Identity
- iTF_01444981; iTF_01450786; iTF_01446803;
- 80% Identity
- -