Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000211.1:156181-165256[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.00022 0.05 16.2 4.3 1 23 10 32 10 32 0.97

2 29 0.001 0.23 14.2 0.3 1 23 38 60 38 60 0.98

3 29 1.6e-07 3.6e-05 26.1 1.2 1 23 66 88 66 88 0.98

4 29 3.8e-05 0.0086 18.6 5.2 1 23 93 115 93 115 0.98

5 29 1.2e-05 0.0027 20.2 0.6 1 23 124 146 124 146 0.98

6 29 4.4e-06 0.00098 21.6 1.1 1 23 152 174 152 174 0.98

7 29 2.9e-06 0.00066 22.2 0.8 1 23 180 202 180 202 0.98

8 29 3.1e-07 6.9e-05 25.2 3.7 1 23 208 230 208 230 0.98

9 29 0.0002 0.044 16.4 1.2 1 21 236 256 236 258 0.95

10 29 6.3e-05 0.014 18.0 2.1 2 23 301 322 300 322 0.96

11 29 0.0053 1.2 11.9 6.9 1 23 328 350 328 350 0.98

12 29 0.12 27 7.6 3.4 1 23 356 378 356 378 0.96

13 29 0.0018 0.4 13.4 1.9 1 23 385 407 385 407 0.97

14 29 5e-06 0.0011 21.4 0.7 1 23 413 435 413 435 0.98

15 29 4.2e-06 0.00094 21.7 1.4 1 23 440 462 440 462 0.98

16 29 0.018 4.1 10.2 1.9 1 20 469 488 469 490 0.92

17 29 2e-06 0.00044 22.7 0.3 1 23 497 519 497 519 0.98

18 29 3.6e-05 0.008 18.7 1.3 1 23 525 547 525 547 0.98

19 29 5.3e-06 0.0012 21.3 0.6 1 21 553 573 553 574 0.95

20 29 0.011 2.4 10.9 0.4 2 23 666 687 665 687 0.96

21 29 0.011 2.4 11.0 4.0 1 23 692 714 692 714 0.97

22 29 0.03 6.7 9.5 0.5 1 23 720 742 720 742 0.98

23 29 0.00029 0.065 15.9 1.3 2 23 749 770 748 770 0.97

24 29 0.18 40 7.1 0.4 1 23 776 799 776 799 0.94

25 29 4.9e-06 0.0011 21.4 1.7 1 23 806 828 806 828 0.96

26 29 0.00059 0.13 14.9 0.2 1 23 833 855 833 855 0.96

27 29 9.6e-05 0.022 17.4 1.6 1 23 861 883 861 883 0.96

28 29 1.4e-06 0.00032 23.1 0.8 1 23 889 911 889 911 0.96

29 29 0.00023 0.051 16.2 2.0 1 23 917 939 917 939 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.00022	0.05	16.2	4.3	1	23	10	32	10	32	0.97
2	29	0.001	0.23	14.2	0.3	1	23	38	60	38	60	0.98
3	29	1.6e-07	3.6e-05	26.1	1.2	1	23	66	88	66	88	0.98
4	29	3.8e-05	0.0086	18.6	5.2	1	23	93	115	93	115	0.98
5	29	1.2e-05	0.0027	20.2	0.6	1	23	124	146	124	146	0.98
6	29	4.4e-06	0.00098	21.6	1.1	1	23	152	174	152	174	0.98
7	29	2.9e-06	0.00066	22.2	0.8	1	23	180	202	180	202	0.98
8	29	3.1e-07	6.9e-05	25.2	3.7	1	23	208	230	208	230	0.98
9	29	0.0002	0.044	16.4	1.2	1	21	236	256	236	258	0.95
10	29	6.3e-05	0.014	18.0	2.1	2	23	301	322	300	322	0.96
11	29	0.0053	1.2	11.9	6.9	1	23	328	350	328	350	0.98
12	29	0.12	27	7.6	3.4	1	23	356	378	356	378	0.96
13	29	0.0018	0.4	13.4	1.9	1	23	385	407	385	407	0.97
14	29	5e-06	0.0011	21.4	0.7	1	23	413	435	413	435	0.98
15	29	4.2e-06	0.00094	21.7	1.4	1	23	440	462	440	462	0.98
16	29	0.018	4.1	10.2	1.9	1	20	469	488	469	490	0.92
17	29	2e-06	0.00044	22.7	0.3	1	23	497	519	497	519	0.98
18	29	3.6e-05	0.008	18.7	1.3	1	23	525	547	525	547	0.98
19	29	5.3e-06	0.0012	21.3	0.6	1	21	553	573	553	574	0.95
20	29	0.011	2.4	10.9	0.4	2	23	666	687	665	687	0.96
21	29	0.011	2.4	11.0	4.0	1	23	692	714	692	714	0.97
22	29	0.03	6.7	9.5	0.5	1	23	720	742	720	742	0.98
23	29	0.00029	0.065	15.9	1.3	2	23	749	770	748	770	0.97
24	29	0.18	40	7.1	0.4	1	23	776	799	776	799	0.94
25	29	4.9e-06	0.0011	21.4	1.7	1	23	806	828	806	828	0.96
26	29	0.00059	0.13	14.9	0.2	1	23	833	855	833	855	0.96
27	29	9.6e-05	0.022	17.4	1.6	1	23	861	883	861	883	0.96
28	29	1.4e-06	0.00032	23.1	0.8	1	23	889	911	889	911	0.96
29	29	0.00023	0.051	16.2	2.0	1	23	917	939	917	939	0.98

Sequence Information

Coding Sequence: ATGGCGAGTCACACAACAGATAGGCCCTTTCCTTGTGACCTCTGTCGGAAGACTTTCAAACGCAAACATGAACTCGTTAGCCACAAGAAGCAACATGAAGGTGTCAAAGATTTTGTATGTGACATTTGCAGCTACGCGACAGGCCATAAAGCCTCACTTGCCGTGCATATTAAGAGACACACGTGCGAAGCTCAATTCCCCTGCAACGTCTGCAACCGAAGTTTCTACACAAATTCTCAACTTCAGAACCATATAAACACTCACTACGGAAAGAAGCATCAGTGCGAGTTTTGCGGCAAGTCGTTCATCCATAAGTACAACATGTTGATCCACCAGAAATCCCACGACCCATCGAGAGACATAAGGAAATTCCCGTGCGAGATTTGCGGCAAAACTTATCAGCGCAGAAACAAACTCATGATGCACATTCGTCTTCACATGGGAGAGATGCGCTACATATGCGACATATGTGGGAAATGTGTGACGAGCAGTACATCCTTGGAGACTCACCGAAGGGTCCACACCGGTGAGAAGCCATTCGTCTGCGACCTTTGCGGGAAAGCGTTCAATTCGAACAACTACCTGCGGGTCCACAAGCGCTCGCACACTGGAGAAAAACCTCACACGTGTAAACAGTGTGGGAAATCGTTCACTCAGCGCTCCACGCTTGTTGTACATATGAGGTACCACACTGGTCAGCGACCATACGAGTGTCTCATGTGCGACAAGCGATTTGTTACAAGGACGTTGTTAAATATTCATCAGAAATGTCATGAGTGTTCACCACAATATGGTGGTGAGTGGTGGAATGAAGGTTTGTGTACATCTCCCGAGTCTCCGAGAGCCATAAAGGGGGGACCCCCACTCTTAAAAGGTCCAAAAAAACAACCTGAAACCTTGGAATGCGACACGTGTGGGAAGAGGTGTAAGAGTAAAGCCAACCTTAATTTACACTCGAGAGTTCACGACCCTTCGAAACATCACAAGTGTAAAACTTGCgataaaatatttctggatAAGCACCATCTCGCAAGGCACACGGCGACTCACAACAAAGAGAGATCTTACGCATGCGACATCTGCGACAAAACTTACAAGTGTCCTTTCAGGCTATCAAGTCATAAAAAAAGTCACTGCGAGAAGAAAAAGACGCACGTGTGCGATATCTGCGACTACTCGACAATCTACAGGTACTATCTGGAAATCCACAAAAAAAGGCATGCGTCTGATTTTACGTTCAAGTGTGATCTGTGCGGGAAAGGTTATTACACCGCTACAGATCTTAAAAGGCATAGAATGATCCATGGCGGGAGTAAACACACATGCGACGTATGCGGCAAAGAGTTTACGATGGATAAAAACCTGAAAGACCATATGAGGATCCATAAATCCAACAGAAGACGTTTCAACTGCGCGCTTTGCggtaaaagctatttttataccAGCCAATTGAATGTGCACAACTGCACCAAAGGAGAGGCTGTCAGATACGTCTGCGATGTTTGCGGAAAAACCTTGACGAGTGCGTCGTCCCTTCAGAGCCACCGCCGGCTACACACAGGAGAGAAGCCGTTCATGTGTGATATCTGTCTGAAGTCCTTCAACACGGCCACTTACTTGCGCATACACAAGCGTTCGCACACGGGAGAGAAGCCCCACGTGTGCAGTCAGTGTGGCAAGTCTTTCACCCAGCGCTCGACGCTTGTCGTTCACTACAGGTGGATGACAGGGAATTATGGTGACCTCACTGaacaattaagaaatatttcacCAGATGTATCATCAGATCACCAAAGACTTCCAAAGCATTCCTGTAAATCACAGGTGAAGGATCCTCAGGAGTTTACGGTTAGATGTGAAATAGCGGAACATAAAGGCTCGAACTATTTTAAGGAtccaataataaatcaaaatccaGACCCTTATAAAACGCCCACACATAATCAGCCCAACAGTCTACGTGTGAAGAAACCTCGTGGCACTAAAGGCCCGCTCATTTGCGACACGTGCGGTAAGTTGTTCCCTTCCGTCAAGAGACTAAACATGCACAGGAAGATTCACACTGACATCCGTTACACTTGCGACATTTGCCGCAAGACTTATAAAAGTGTCAGCATGTTTTATACCCACAAGAAATTccataaaagtttgaaaacgtACGACTGTGACGTGTGCGACTACCGTACTCCTTGGAAAGGTAATATGAACAATCATCGCAGGAGACATTTCGGTGAGACTAAAGTTACCTGTGACATGTGTGATAAAGGATTCTACAACAAGTGTGATTTGGAAGAACACAAAAATATTCACACAGggaacaaaccttttaaatgcgACATTTGCGAGTCGCCATTTTGGTCCAAAAGGAGTCTATGGGATCATAAAAAAGCACAACACAACTCAAACATAAAAGAGTTCAAATGCACTCAATGCGGCAAAAGCTTTGTTTTCAAGAGCCGGTTAAACAGGCACTTGGAGGCCCATCGGGGGAAACGTTTCATGTGCGACGTTTGCGGCAAATCTGTGACGTCGGACCAGTCTCTGAGGGCTCACAAAACCATCCACACGGATGAGAAGAAGTTCCTTTGCGACGTCTGTTCAAAGGCGTTCAACACAACGCAATCCTTGAAACTTCACAGGCGTACGCACACAGGCGAAAAACCGTACCTGTGCAAGGAATGTGGCAAGGCATTCACCCAGCGCTCGACGCTTGTTGTCCACACTCGTTACCACTCTGGGGAACGCCCGTACATCTGCCACCTATGTTCCAAAGGTTTTGTTGCAAAGACCCACTTGAACGCTCACATTGAAAAACACAGCTGA
Protein Sequence: MASHTTDRPFPCDLCRKTFKRKHELVSHKKQHEGVKDFVCDICSYATGHKASLAVHIKRHTCEAQFPCNVCNRSFYTNSQLQNHINTHYGKKHQCEFCGKSFIHKYNMLIHQKSHDPSRDIRKFPCEICGKTYQRRNKLMMHIRLHMGEMRYICDICGKCVTSSTSLETHRRVHTGEKPFVCDLCGKAFNSNNYLRVHKRSHTGEKPHTCKQCGKSFTQRSTLVVHMRYHTGQRPYECLMCDKRFVTRTLLNIHQKCHECSPQYGGEWWNEGLCTSPESPRAIKGGPPLLKGPKKQPETLECDTCGKRCKSKANLNLHSRVHDPSKHHKCKTCDKIFLDKHHLARHTATHNKERSYACDICDKTYKCPFRLSSHKKSHCEKKKTHVCDICDYSTIYRYYLEIHKKRHASDFTFKCDLCGKGYYTATDLKRHRMIHGGSKHTCDVCGKEFTMDKNLKDHMRIHKSNRRRFNCALCGKSYFYTSQLNVHNCTKGEAVRYVCDVCGKTLTSASSLQSHRRLHTGEKPFMCDICLKSFNTATYLRIHKRSHTGEKPHVCSQCGKSFTQRSTLVVHYRWMTGNYGDLTEQLRNISPDVSSDHQRLPKHSCKSQVKDPQEFTVRCEIAEHKGSNYFKDPIINQNPDPYKTPTHNQPNSLRVKKPRGTKGPLICDTCGKLFPSVKRLNMHRKIHTDIRYTCDICRKTYKSVSMFYTHKKFHKSLKTYDCDVCDYRTPWKGNMNNHRRRHFGETKVTCDMCDKGFYNKCDLEEHKNIHTGNKPFKCDICESPFWSKRSLWDHKKAQHNSNIKEFKCTQCGKSFVFKSRLNRHLEAHRGKRFMCDVCGKSVTSDQSLRAHKTIHTDEKKFLCDVCSKAFNTTQSLKLHRRTHTGEKPYLCKECGKAFTQRSTLVVHTRYHSGERPYICHLCSKGFVAKTHLNAHIEKHS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448778;
90% Identity: iTF_01448778;
80% Identity: -