Tmon020821.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000790.1:90250-92253[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-10 2.9e-07 32.2 0.0 3 36 11 45 9 49 0.93
Sequence Information
- Coding Sequence
- ATGTCAAAAAAACGGAAACAATGGTCCGCAGAAAACATGACAAAGGCGATATTAGCTGTCCGAGCGAAAGAAATGGGTTTACTACGTGCATCCAAGCACTTTGATGTCCCCAAATCCACATTAAAGGACAAAGTAAACTGTGAGGaaagagatataaataaattagtgacTACAAAACTTGGTAGAAAACCAGCACTTGGTagtgaattagaggaagcatTAGTGAACTACTGCTTGGAAATGGAGTCTCGCTTTTATGGGCTGACGGCCAAAGATATTAAAAGAATGGCCTTCCAGTTAGCTGAAAAAAATGGCCTCCTGCATCCATTTGGAAAGAGAGATGAAGCAGCTGGATGGAAGTGGCTGCGTTCATTTCTGAGAAGGCATCCACAACTTAGCCTAAGGAAACCACAAGCGACCTCAATGAAAAGAGTCAAAGGCTTCACTCGAGAAAACGTTAACAAATTTTTTGACCTATACGAGCCTCtgcttaaattaattaaaaattctcCAAACAGATTGTACAATTGCGACGAAACAGGTCTGACAATTGTACAGCACAAATTAAGCAAAGTGATATCTTTAAAGGGTAAGCGTCAAGTTGGGGCAGTTACTTCGGCAGAGAGGGGTTCCTTGGTGACAATGGTTACATGCATGAGTGCAACGGGCCACTTTATTCCACCACTCCTGGTGTTTcctagaaaaaatatgaaaccaGAACTCCTTGATGGGGCCCCAAACGGAAGTACTGCAGCGTGTCATAAATCTGGATGGATAGAAATGGAAAGTTTTTTGAAATGGTTTCAGGAGCAGTTCTTGGCCAATGTGAAGCCCACCAAAGACGATCCTGTGGTTTTGGTCTTGGATGGCCATTACTCACATACCAGAAACCTGCCATTATTAGACCTTTCCCGAGATAATGGTGTGCATATTGTAAGTTTGCCACCCCACTGCTCACACAAAATGCAGCCGCTTGACAGATCTTTCATGGCACCATTTAAGTCTTACTACGCGCAAGCAATAGAATCTTGGCTCAAGCAAAACATAGGCAGAGTTGTAACTCACTATCAAATAGCAAGACTGTTGGGTCAAGCTTACAACAAATCAGCTACAGTTGCGACAGCAGAACACGGCTTCAGGAAAACTGGCTTGTTTCCCCTCAACCAAGAAATTTTTCAACCGCATGAGTTTGCTGCTGTTGACGATACTTCTGATCCAACAACCAACAACCAACGAACTGGAACTAGTGGCATCCAACAACCTGGTTATAGCGGAATTCAACAACTTGGTTTTAATATCATCCAACAACCTGATTCTAACACGTTCCAACAAACTTATTCCAGTGTAATCCAACAACCTGGTTCTAGCGGCATCCAACATCCTGGTTATAGAAAAATCCAACAACCTAGTTCTAGCAGCTTCCAACATCTTGGTTCTAGCAGTATTCATTCATCGCCTCTAGGGACTCCTAAAATAATGCCAGCTGATATCAGCCCTCTTCCTTCCTTAAAAGTACAAGCCCAAACCACTAAAGTGAGAGGAAGACCAAGCTGTCCTGCCGCTGTGCTTACAAGCTCGCCTTACAAGAAACAGCTGTTAGAAGACATTACAAAGAAAGGAAAAATGAAGGACGCTAAAGCAATTAAGGTAAGCAAGAAACCAGGGATAAAATCAACATCTGAAAGGATAAAACGAGCTAGCAAGAAGAATACAGTTCCAAAAGGCAAAAGAAAGGAAACAAATGCAATAAAGAAAAGGAATAAACTGAAAGTGTTATCTTCAGAATCAAGTGAAGAAGAGTTGGCTGAGCCTCTGACTGTATCCACAGATGAAGAGGACAGTGAAGATGATTGTGAGTGTCCTTACTGTAACAAGTCATATTCAACAGACAGGGGGGGAGAACAATGGATTATCTGCACTAAGTGTCGTGTTTGGTGTCATGAGCAATGCTCAGGGACAGACGATTATAAATCATTTATCTGTGACTTTTGTTTGGAGGCTTAG
- Protein Sequence
- MSKKRKQWSAENMTKAILAVRAKEMGLLRASKHFDVPKSTLKDKVNCEERDINKLVTTKLGRKPALGSELEEALVNYCLEMESRFYGLTAKDIKRMAFQLAEKNGLLHPFGKRDEAAGWKWLRSFLRRHPQLSLRKPQATSMKRVKGFTRENVNKFFDLYEPLLKLIKNSPNRLYNCDETGLTIVQHKLSKVISLKGKRQVGAVTSAERGSLVTMVTCMSATGHFIPPLLVFPRKNMKPELLDGAPNGSTAACHKSGWIEMESFLKWFQEQFLANVKPTKDDPVVLVLDGHYSHTRNLPLLDLSRDNGVHIVSLPPHCSHKMQPLDRSFMAPFKSYYAQAIESWLKQNIGRVVTHYQIARLLGQAYNKSATVATAEHGFRKTGLFPLNQEIFQPHEFAAVDDTSDPTTNNQRTGTSGIQQPGYSGIQQLGFNIIQQPDSNTFQQTYSSVIQQPGSSGIQHPGYRKIQQPSSSSFQHLGSSSIHSSPLGTPKIMPADISPLPSLKVQAQTTKVRGRPSCPAAVLTSSPYKKQLLEDITKKGKMKDAKAIKVSKKPGIKSTSERIKRASKKNTVPKGKRKETNAIKKRNKLKVLSSESSEEELAEPLTVSTDEEDSEDDCECPYCNKSYSTDRGGEQWIICTKCRVWCHEQCSGTDDYKSFICDFCLEA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450429;
- 90% Identity
- iTF_01448402; iTF_01448406; iTF_01448479; iTF_01446450; iTF_01450429; iTF_01450433; iTF_01450434; iTF_01450456; iTF_01450430; iTF_01450431; iTF_01450432;
- 80% Identity
- -