Tshe007970.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000432.1:36251-38257[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-10 3.6e-07 32.2 0.0 3 36 12 46 10 50 0.93
Sequence Information
- Coding Sequence
- ATGCCGTTAAAAAAACGGAAACAATGGTCCGCAGAAAACATGACAAAGGCAATATTAGCTGTCCGAGCGAAAGAAATGGGTTTACTACGTGCATCCAAGCACTTTGATGTCCCCAAATCTACATTAAAAGACAAAGTAAACTGTGAGGAaagagatataaataaattagtgacTACAAAACTTGGTAGAAAACCAGCACTTGGtagtgaattagaggaagcatTAGTGAAATACTGCTTGGAAATGGAGTCTCGCTTTTATGGGCTGACGGCCAAAGATATTAAAAGAATGGCGTTCCAGTTAGCTGAAAAAAATGGCCTCCTGCATCCATTTGGAAAGAGAGATGAAGCAGCTGGATGGAAGTGGCTGCGCTCATTTTTGAGAAGGCATCCACAACTTAGCCTAAGGAAACCACAAGCGACCTCAATGAAAAGAGTCAAAGGCTTCACTCGAGAAAacgttaacatattttttgaccTATACGAGCCTCtgctcaaattaattaaaaattctcCAAACAGATTGTACAATTGCGACGAAACAGGTCTGACAATTGTACAGCACAAATTAAGCAAAGTGATATCTTTAAAGGGTAAGCGTCAAGTTGGGGCAGTTACTTCGGCAGAGAGGGGTTCCTTGGTGACAATGGTTACATGCATGAGTGCAACGGGCCACTTTATTCCACCACTCTTGGTGTTTcctagaaaaaatatgaaaccaGAGCTCCTTGATGGGGCCCCAAACGGAAGTACTGCAGCGTGCCATAAATCTGGATGGATAGAAATGGAAAGTTTTTTGAAATGGTTTCAGGAGCAGTTCTTGGCAAATGTGAAGCCCACCAAAGACGATCCTGTGGTTTTGGTCTTGGATGGCCATTACTCACATACCAGAAACCTGCCATTATTAGACCTTTCCCGAGATAATGGGGTGCATATTGTAAGTTTGCCACCCCACTGCTCACACAAAATGCAGCCGCTTGACAGATCTTTCATGGCACCATTTAAGTCTTACTACGCGCAAGCAATAGAATCTTGGATCAAGCAAAACATAGGCAGAGTTGTAACTCACTATCAAATAGCAAGACTGTTGGGTCAAGCTTACAACAAATCAGCTACAGTTGCGACAGCAGAACACGGCTTCAGGAAAACTGGCTTGTTTCCCCTCAACCGTGAAATTTTTCAACCGCATGAGTTTGCTGCTGTTGGCGATACTTCTGATCCAACAACCAACAACAAACGAGCTGGAACAAGTGGCATCCAACAACTTGGTTCTAATAGCATCCAACAACCTGATTCTAGCACGAGCCAACAAACTTATTCCAGTGGAATCCAACAAACTTATTTCAGTGGAATCCAACAACCTGGTTCTAGTGGCATCCAACATCCTGGTTATAGAGAAATCCAACAACCTAGTTCTAGCAGCCTCCAATATCTTGGTTCTAGCAGTATTCATTTATCGCCTGTAGGGACTGCTAAAATAATGCCAGCTGATATCAGCCCTCTTCCTTCCTTAAAAGTACAAGCCCAAACCACTAAAGCGAGAGGAAGACCAAGCTGTCCTGCCGCTGTGCTTACAAGCTCGCCTTACAAGAACCAGCTGTTAGAAGACAttacaaagaaagaaaaaatgaagGACGCTAAAGCAATTAAGGTAAGCAAGAAACCAGGGATAAAATCAACATCTGAAAGGATAAAACGAGCTAGCAAGAAGACTAAAGTTCCAAAAGGCAAACGAAAGGAAACAAATGCAATAAAGAAAAGGAATAAACTGAAAGTGTTATCTTCAGAATCAAGTGAAGAAGAGTTGGCTGAGCCTCTGACTGTATCCACAGATGAAGAGGACAGTGAATATGATTGTGAATGTCCTTACTGTAACAAGTCATATTCAACAGACAGGGGGGGAGAACAATGGATTATCTGCACCAAGTGTCGTGTTTGGTGCCATGAGCAATGCTCAGGGACAGAcgattataaatcatttatctGTGACTTTTGTTTGGAAGCTTAG
- Protein Sequence
- MPLKKRKQWSAENMTKAILAVRAKEMGLLRASKHFDVPKSTLKDKVNCEERDINKLVTTKLGRKPALGSELEEALVKYCLEMESRFYGLTAKDIKRMAFQLAEKNGLLHPFGKRDEAAGWKWLRSFLRRHPQLSLRKPQATSMKRVKGFTRENVNIFFDLYEPLLKLIKNSPNRLYNCDETGLTIVQHKLSKVISLKGKRQVGAVTSAERGSLVTMVTCMSATGHFIPPLLVFPRKNMKPELLDGAPNGSTAACHKSGWIEMESFLKWFQEQFLANVKPTKDDPVVLVLDGHYSHTRNLPLLDLSRDNGVHIVSLPPHCSHKMQPLDRSFMAPFKSYYAQAIESWIKQNIGRVVTHYQIARLLGQAYNKSATVATAEHGFRKTGLFPLNREIFQPHEFAAVGDTSDPTTNNKRAGTSGIQQLGSNSIQQPDSSTSQQTYSSGIQQTYFSGIQQPGSSGIQHPGYREIQQPSSSSLQYLGSSSIHLSPVGTAKIMPADISPLPSLKVQAQTTKARGRPSCPAAVLTSSPYKNQLLEDITKKEKMKDAKAIKVSKKPGIKSTSERIKRASKKTKVPKGKRKETNAIKKRNKLKVLSSESSEEELAEPLTVSTDEEDSEYDCECPYCNKSYSTDRGGEQWIICTKCRVWCHEQCSGTDDYKSFICDFCLEA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450429;
- 90% Identity
- iTF_01448405;
- 80% Identity
- -