Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010001238.1:78867-80834[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 8.5e-09 5.6e-06 28.4 0.0 5 36 1 33 1 37 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	8.5e-09	5.6e-06	28.4	0.0	5	36	1	33	1	37	0.93

Sequence Information

Coding Sequence: ATGACAAAGGCAATATTAGCTGTCCGAGCGAAAGAAATGGGTTTACTACGTGCATCCAAGCACTTTGATGTCCCCAAATCTACATTAAAAGACAAAGTAAACTGTGAGGAaagagatataaataaattagtgacTACAAAACTTGGTAGAAAACCAGCACTTGGtagtgaattagaggaagcatTAGTGAAATACTGCTTGGAAATGGAGTCTCGCTTTTATGGGCTGACGGCCAAAGATATTAAAAGAATGGCGTTCCAGTTAGCTGAAAAAAATGGCCTCCTGCATCCATTTGGAAAGAGAGATGAAGCAGCTGGATGGAAGTGGCTGCGCTCATTTTTGAGAAGGCATCCACAACTTAGCCTAAGGAAACCACAAGCGACCTCAATGAAAAGAGTCAAAGGCTTCACTCGAGAAAacgttaacatattttttgaccTATACGAGCCTCtgctcaaattaattaaaaattctcCAAACAGATTGTACAATTGCGACGAAACAGGTCTGACAATTGTACAGCACAAATTAAGCAAAGTGATATCTTTAAAGGGTAAGCGTCAAGTTGGGGCAGTTACTTCGGCAGAGAGGGGTTCCTTGGTGACAATGGTTACATGCATGAGTGCAACGGGCCACTTTATTCCACCACTCTTGGTGTTTcctagaaaaaatatgaaaccaGAGCTCCTTGATGGGGCCCCAAACGGAAGTACTGCAGCGTGCCATAAATCTGGATGGATAGAAATGGAAAGTTTTTTGAAATGGTTTCAGGAGCAGTTCTTGGCAAATGTGAAGCCCACCAAAGACGATCCTGTGGTTTTGGTCTTGGATGGCCATTACTCACATACCAGAAACCTGCCATTATTAGACCTTTCCCGAGATAATGGGGTGCATATTGTAAGTTTGCCACCCCACTGCTCACACAAAATGCAGCCGCTTGACAGATCTTTCATGGCACCATTTAAGTCTTACTACGCGCAAGCAATAGAATCTTGGATCAAGCAAAACATAGGCAGAGTTGTAACTCACTATCAAATAGCAAGACTGTTGGGTCAAGCTTACAACAAATCAGCTACAGTTGCGACAGCAGAACACGGCTTCAGGAAAACTGGCTTGTTTCCCCTCAACCGTGAAATTTTTCAACCGCATGAGTTTGCTGCTGTTGGCGATACTTCTGATCCAACAACCAACAACAAACGAGCTGGAACAAGTGGCATCCAACAACTTGGTTCTAATAGCATCCAACAACCTGATTCTAGCACGAGCCAACAAACTTATTCCAGTGGAATCCAACAAACTTATTTCAGTGGAATCCAACAACCTGGTTCTAGTGGCATCCAACATCCTGGTTATAGAGAAATCCAACAACCTAGTTCTAGCAGCCTCCAATATCTTGGTTCTAGCAGTATTCATTTATCGCCTGTAGGGACTGCTAAAATAATGCCAGCTGATATCAGCCCTCTTCCTTCCTTAAAAGTACAAGCCCAAACCACTAAAGCGAGAGGAAGACCAAGCTGTCCTGCCGCTGTGCTTACAAGCTCGCCTTACAAGAACCAGCTGTTAGAAGACAttacaaagaaagaaaaaatgaagGACGCTAAAGCAATTAAGGTAAGCAAGAAACCAGGGATAAAATCAACATCTGAAAGGATAAAACGAGCTAGCAAGAAGACTAAAGTTCCAAAAGGCAAACGAAAGGAAACAAATGCAATAAAGAAAAGGAATAAACTGAAAGTGTTATCTTCAGAATCAAGTGAAGAAGAGTTGGCTGAGCCTCTGACTGTATCCACAGATGAAGAGGACAGTGAAGATGATTGTGAATGTCCTTACTGTAACAAGTCATATTCAACAGACAGGGGGGGAGAACAATGGATTATCTGCACCAAGTGTCGTGTTTGGTGCCATGAGCAATGCTCAGGGACAGAcgattataaatcatttatctGTGACTTTTGTTTGGAAGCTTAG
Protein Sequence: MTKAILAVRAKEMGLLRASKHFDVPKSTLKDKVNCEERDINKLVTTKLGRKPALGSELEEALVKYCLEMESRFYGLTAKDIKRMAFQLAEKNGLLHPFGKRDEAAGWKWLRSFLRRHPQLSLRKPQATSMKRVKGFTRENVNIFFDLYEPLLKLIKNSPNRLYNCDETGLTIVQHKLSKVISLKGKRQVGAVTSAERGSLVTMVTCMSATGHFIPPLLVFPRKNMKPELLDGAPNGSTAACHKSGWIEMESFLKWFQEQFLANVKPTKDDPVVLVLDGHYSHTRNLPLLDLSRDNGVHIVSLPPHCSHKMQPLDRSFMAPFKSYYAQAIESWIKQNIGRVVTHYQIARLLGQAYNKSATVATAEHGFRKTGLFPLNREIFQPHEFAAVGDTSDPTTNNKRAGTSGIQQLGSNSIQQPDSSTSQQTYSSGIQQTYFSGIQQPGSSGIQHPGYREIQQPSSSSLQYLGSSSIHLSPVGTAKIMPADISPLPSLKVQAQTTKARGRPSCPAAVLTSSPYKNQLLEDITKKEKMKDAKAIKVSKKPGIKSTSERIKRASKKTKVPKGKRKETNAIKKRNKLKVLSSESSEEELAEPLTVSTDEEDSEDDCECPYCNKSYSTDRGGEQWIICTKCRVWCHEQCSGTDDYKSFICDFCLEA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450429;
90% Identity: iTF_01448405;
80% Identity: iTF_01450433;