Tgen008432.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000403.1:152686-161323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.6 4.9e+02 3.5 1.0 2 21 32 51 31 52 0.89 2 15 0.59 1.1e+02 5.5 0.5 1 12 224 235 224 244 0.88 3 15 1.2e-05 0.0023 20.3 0.9 1 23 447 470 447 470 0.97 4 15 0.27 51 6.6 1.7 2 23 495 516 494 516 0.94 5 15 5.6 1e+03 2.4 1.7 3 23 536 556 534 556 0.87 6 15 0.038 7 9.3 4.3 2 23 585 606 584 606 0.97 7 15 6.4 1.2e+03 2.3 0.3 1 10 640 649 640 661 0.73 8 15 0.00021 0.038 16.4 0.9 1 23 667 689 667 689 0.98 9 15 0.0012 0.22 14.0 2.1 1 23 695 717 695 717 0.96 10 15 0.0062 1.2 11.7 0.5 1 23 723 745 723 745 0.98 11 15 0.16 31 7.2 2.7 1 23 751 773 751 773 0.92 12 15 0.00028 0.053 15.9 4.4 1 23 779 801 779 801 0.98 13 15 1.9e-05 0.0035 19.6 1.0 1 23 807 829 807 829 0.98 14 15 0.063 12 8.6 1.9 1 23 833 855 833 855 0.95 15 15 0.00075 0.14 14.6 0.2 1 23 864 886 864 886 0.96
Sequence Information
- Coding Sequence
- ATGGGGACGTATGTATGTCCTCTGTGCTGTGGAGGGGAGTTCTTGTCACGGGACTCCTTGAGGGACCACCTACTGTGCTACACGGAGAGCCTCTACTGTCCAGAGTGCTGCAAATGTTTCGACAGTGTTGTCCGACTAGCAGAACACCTGGAGACTACCTGCGACGAAGCTCGCACGGGGGACAGTGACTGTACAGGGGTCAATCATACACAAAAACAGGACAAAATTTTGGAATGCCGCTCCACTCAGACTTTGGATTCAACCTCAATTAAAAGAGAAGgtttgttGAACGACCAGAGCCAAGTCAAAGCAGAACCAAACTACAACTTTTCATTCAGTCGTATTAGAAGCAAAATAAAAGGAGAAGACACTTTTCTCATGGATCTTGGTGACTATAACGAGGacgatgatgaagatgatgaagatATCCcagaaaacaatgtttattttcctTACAATATCTCAGAAGATGTCATTGATATCTCAGACAACGATGCCGATAACTCGGAAAGTGATACCGATAGTTCGGAAGCCGATCTTTCGGAAGACAATCTCTCAGAAGATGTTGTTGATATCTCCGAGGACGACGTCGATTGGCGCAGCAAGCAGGTCAGGCCGGAGAATGATGGCTCTGTCGAGAGTTACGCACACCCAGCCCCCACGCCCATGTTTAAGTGCTCTGTGTGTCCGTATGAGTTCACGTCCGTCGAGGAGCACATAAAACTGTATCACACACAAGACGAAGTTGAATTACAGGTCCCAAAGGAAgtttcaaaaaaccttttaagagATGGAGAAAATGTGATCAAGCCAATTTCAAACAACCAGGAGGCAAGTGCCGATGAAACTACCACTCAAAAGTTACTCCCTGATCCAAATAATGGCCTTGAAATTCCGGGCGACCACCAAAATGGGGATGTGGAAATGGTTGACGACCATCAAAATAGTCCCCCTGAACTGGCAAACGATCACGTGCAACGTgaacctcaagattatgataaGGTGACTTTTGATCACGGAGAAAGACTCATAATGGACCCGAAAGGTTTAACCTATGTTAGGAAGCTCATTCCGTGTGGTGAGATCTACTGCACCACCAAGGAGAATAAACAAACACTACCGACGGCGCAAACTCAACCTCAAGAAGTTGAAGTAAAgtcaaaaaataaatccatagaTGACTACCTTCAAACGGTGACTTCATTCAGAGATTACACCGAGAGACGTTATTTCACTGAAACTGGTAAACGTCTGGGTTCCATATACACCTGCAAGGTATGCAACCGGGAGTGTCTCACATACCCGACCTTTAGACATCACTCCTGCACGGCAATTGTTTATTCCTGTGATGTGTGCAGTGCAACCTTCAGGCGAAAAAAAGACCTCACGAAACACTTGCTAAGTGAACACAATCTCCCGAACGTTTCTCTGAAAAAAAAGGATGGTTTGAAAACCAAGGATGTCAAGCCGCCTCTATCCCTAGTCTGCGAGGCTTGCGGAACTGTCTTCAATAACAAGCGCTCCCATTTGCAGCATAAAAAAATGCACCTGCCTAAAATTGTCGACGTTGAAGTTAACGAGGATGGCACTCTAGCGGACCTGAATTGCAAGTGCTGCACCTTTGTCGCCATGAACAAGAAAGGCCTTAGGACCCACATGATTGTGCATGCACCGTACAAGAAGAGAAGAACAGAACCTACCTCGGAGGTGAGCATGCAAGACCCGTCGACGATACTGACTGCCGACAACCTGACTTGCCACATGTGCGATCGGTTGTTCGAGCGGACCCTGGACCTCCACGAGCACTACAAGACACATTATTACAACAAGGAAGATGAGAAGAAGGAAGTGGCGAGGTTGaacaatattacatttgaaCGCGCTAACGTAGACAACCCTGAGAAAGCTTCGTTGACCTTCACATGCGAGATCTGCCACCTGACTTTGGACAAATCCATTCGCGTGAGCCATATCCTCTCACATTCCGGTGACGTGCGCTTCACTTGCGAGATATGTAACGGTAATTTCTACACCCGCGAACAATTCAACCTTCACATGCGCGCCCACAATGGGGACACACCTTACATGTGTAGAATCTGCAAGAAGAGGTTCGCCGACATGCATCTACTGGAAAAACACTCTGAGTCGCACAGAGAGAACAGAAACTACCCGTGCCGGTTCTGTAGCAAGCGTTTTCAGAGGCCTAGCGGGACACTCGCTCACGAACGTATACACACAGGCGAACGCCCATTCACGTGCCAGCACTGCGGGTTAAAGTTTCGTCTGAGGGGGACACGCGACATGCACAGCCGTATTCACACCGGTGTCAAACCTTATAACTGTGAACACTGCGGTATGAAGTTCAGGTCGAGATATAGCTTCCACGCTCACGTTGCTACACATTATGACGCCCGCGACTTCAAGTGTACCATGTGCCCAAAGACCTTCAAGACGGCGGCGGGACTTTCTAGCCACAAGAACAACCACACAAAACCTTACGCTTGCTCCGTTTGTAAGCGCAAGTTCAACACCTCGTTTGCTGAACGTAAGCACAGGCTTTCTCATTCCATGGGGAAGAATGCGCTCAAGTACGTGTGCGACCTCTGTGGAGCCTGCTACGCTCGGTCTTTCGGGCTCCGTGACCATCTGATTGCGCACAACGAAGAGGCAATGAGTAAGGTGCCCACCAGAGAAGATGCCACCCCTCAGAACATTAGAGATTCTTTGACGCCCGTAGTCGCCCCTAAAGCTGTGCACTTTGTTGAGATTGAAGAGACAGTGTTGTCTAGCTAA
- Protein Sequence
- MGTYVCPLCCGGEFLSRDSLRDHLLCYTESLYCPECCKCFDSVVRLAEHLETTCDEARTGDSDCTGVNHTQKQDKILECRSTQTLDSTSIKREGLLNDQSQVKAEPNYNFSFSRIRSKIKGEDTFLMDLGDYNEDDDEDDEDIPENNVYFPYNISEDVIDISDNDADNSESDTDSSEADLSEDNLSEDVVDISEDDVDWRSKQVRPENDGSVESYAHPAPTPMFKCSVCPYEFTSVEEHIKLYHTQDEVELQVPKEVSKNLLRDGENVIKPISNNQEASADETTTQKLLPDPNNGLEIPGDHQNGDVEMVDDHQNSPPELANDHVQREPQDYDKVTFDHGERLIMDPKGLTYVRKLIPCGEIYCTTKENKQTLPTAQTQPQEVEVKSKNKSIDDYLQTVTSFRDYTERRYFTETGKRLGSIYTCKVCNRECLTYPTFRHHSCTAIVYSCDVCSATFRRKKDLTKHLLSEHNLPNVSLKKKDGLKTKDVKPPLSLVCEACGTVFNNKRSHLQHKKMHLPKIVDVEVNEDGTLADLNCKCCTFVAMNKKGLRTHMIVHAPYKKRRTEPTSEVSMQDPSTILTADNLTCHMCDRLFERTLDLHEHYKTHYYNKEDEKKEVARLNNITFERANVDNPEKASLTFTCEICHLTLDKSIRVSHILSHSGDVRFTCEICNGNFYTREQFNLHMRAHNGDTPYMCRICKKRFADMHLLEKHSESHRENRNYPCRFCSKRFQRPSGTLAHERIHTGERPFTCQHCGLKFRLRGTRDMHSRIHTGVKPYNCEHCGMKFRSRYSFHAHVATHYDARDFKCTMCPKTFKTAAGLSSHKNNHTKPYACSVCKRKFNTSFAERKHRLSHSMGKNALKYVCDLCGACYARSFGLRDHLIAHNEEAMSKVPTREDATPQNIRDSLTPVVAPKAVHFVEIEETVLSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448963; iTF_01449957;
- 90% Identity
- -
- 80% Identity
- -