Tpod054895.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000013.1:17907376-17915998[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9 3.6e+02 3.7 1.0 2 21 32 51 31 52 0.89 2 15 0.42 82 5.7 0.5 1 12 198 209 198 218 0.88 3 15 8.6e-06 0.0017 20.5 0.9 1 23 312 335 312 335 0.97 4 15 0.19 38 6.8 1.7 2 23 360 381 359 381 0.94 5 15 4 7.7e+02 2.7 1.7 3 23 401 421 399 421 0.87 6 15 0.027 5.2 9.5 4.3 2 23 450 471 449 471 0.97 7 15 4.6 8.8e+02 2.5 0.3 1 10 505 514 505 526 0.73 8 15 0.00015 0.028 16.6 0.9 1 23 532 554 532 554 0.98 9 15 0.00083 0.16 14.3 2.1 1 23 560 582 560 582 0.96 10 15 0.0044 0.85 12.0 0.5 1 23 588 610 588 610 0.98 11 15 0.12 23 7.5 2.7 1 23 616 638 616 638 0.92 12 15 0.0002 0.039 16.2 4.4 1 23 644 666 644 666 0.98 13 15 1.3e-05 0.0026 19.9 1.0 1 23 672 694 672 694 0.98 14 15 0.045 8.7 8.8 1.9 1 23 698 720 698 720 0.95 15 15 0.00053 0.1 14.9 0.2 1 23 729 751 729 751 0.96
Sequence Information
- Coding Sequence
- ATGGGGACGTATGTATGTCCTCTGTGCTGTGGAGGGGAGTTCTTGTCACGGGACTCCTTGAGGGACCACCTACTGTGCTACACGGAGAGCCTCTACTGTCCAGAGTGCTGCAAATGTTTCGACAGTGTTGTCCGACTAGCAGAACACCTGGAGACTACCTGCGACGAAGCCCGCACGGGGGACAGTGACTGTACAGGGGTCAATCATACACAAAAACAGAGCCAAGTCAAAGCAGAACCAAACTACAACTTTTCATTCAGTCGTATTAGAAGCAAAATAAAAGGAGAAGATACTTTTCTCATGGATCTTGGTGACTATAACGAGGacgatgatgaagatgatgaagaTATCCcagaaaacaatgtttattttcctTACAATATCTCAGAAGATGTCATTGATATCTCAGACAACGATGTCGATAGCTCGGAAAGTGATACCGATAGTTCGGAAGACGATCTTTCGGAAGACAATCTCTCAGAAGATGTTGTTGATATCTCTGAGGACGACGTCGATTGGCGCAGCAAGCAGGTCAGGCCGGAGAATGATGGCTCTGTCGAGAGTTACTCACACCCAGCCCCCACGCCCATGTTTAAGTGCTCTGTGTGTCCGTACGAGTTCACGTCCGTCGAGGAGCACATAAAACTGTATCACACACAAGACGAGGTTGAATTACAGATCTACTGCACCACCAAGGAGAATAAACAAACACTACCGACGGCGCAAACTCAACCTCAAGAAGTTGAAGTAAAGTCAAAAAATAAATCCATAGATGACTACCTTCAAACGGTGACTTCATTCAGAGATTACACCGAGAGACGTTATTTCACTGAAACTGGTAAACGTCTGGGTTCCATATACACCTGCAAGGTATGCAACCGGGAGTGTCTCACATACCCGACCTTTAGACATCACTCCTGCACGGCAATTGTTTATTCCTGTGATGTGTGCAGTGCAACCTTCAGGCGAAAAAAAGACCTCACGAAACACTTGCTAAGTGAACACAATCTCCCGAACGTTTCTCTGAAAAAAAAGGATGGTTTGAAAACCAAGGATGTCAAGCCGCCTCTATCCCTAGTCTGCGAGGCTTGCGGAACTGTCTTCAATAACAAGCGCTCCCATTTGCAGCATAAAAAAATGCACCTGCCTAAAATTGTCGACGTGGAAGTTAACGAGGATGGCACTCTAGCGGACCTGAATTGCAAGTGCTGCACCTTTGTCGCCATGAACAAGAAAGGCCTTAGGACCCACATGATTGTGCATGCACCGTACAAGAAGAGAAGAACAGAACCTACCTCGGAGGTGAGCATGCAGGACCCGTCGACGATACTGACTGCCGACAACCTGACTTGCCACATGTGCGACCGGTTGTTTGAGCGGACCCTGGACCTCCACGAGCACTACAAGACACATTATTACAACAAGGAAGATGAGAAGAGGGAAGTGGCGAGGTTGAACAATATTACATTTGAACGCGCTAACGTAGACAACCCTGAGAAAGCTTCGTTGACCTTCACATGCGAGATCTGCCACCTGACTTTGGACAAATCCATTCGCGTGAGCCATATCCTCTCACATTCCGGTGACGTGCGCTTCACTTGCGAGATATGTAACGGTAATTTCTACACCCGCGAACAATTCAACCTTCACATGCGCGCCCACAATGGGGACACGCCTTACATGTGTAGAATCTGCAAGAAGAGGTTCGCCGACATGCATCTACTGGAAAAACACTCTGAGTCGCACAAAGAGAACAGAAACTACCCGTGCCGGTTCTGTAGCAAGCGTTTTCAGAGGCCTAGCGGGACACTCGCCCACGAACGTATACACACAGGCGAACGCCCATTCACGTGCCAGCACTGCGGGTTAAAGTTTCGTCTGAGGGGGACGCGCGACATGCACAGTCGTATTCACACCGGTGTCAAACCTTATAACTGTGAACACTGCGGTATGAAGTTCAGGTCGAGGTATAGCTTCCACGCTCACGTTGCTACACATTATGACGCCCGTGACTTCAAGTGTACCATGTGCCCAAAGACCTTCAAGACGGCGGCGGGACTTTCTAGCCACAAGAACAACCACACAAAACCTTACGCTTGCTCCGTTTGTAAGCGCAAGTTCAACACCTCGTTTGCTGAACGCAAGCACAGGCTTTCTCATTCCATGGGGAAGAATGCGCTCAAGTACGTGTGCGACCTATGTGGAGCCTGCTACGCTCGGTCTTTCGGGCTCCGTGACCATCTGATTGCGCACAACGAAGAGGCAATGAGTAAGGTGCCCACCAGAGAAGATGCCACCCCTCAGAACATTAGAGATTCTTTGACGCCCGTAGTCGCCCCTAAAGCTGTGCACTTTGTTGAGATTGAAGAGACAGTGTTGTCTAGCTAA
- Protein Sequence
- MGTYVCPLCCGGEFLSRDSLRDHLLCYTESLYCPECCKCFDSVVRLAEHLETTCDEARTGDSDCTGVNHTQKQSQVKAEPNYNFSFSRIRSKIKGEDTFLMDLGDYNEDDDEDDEDIPENNVYFPYNISEDVIDISDNDVDSSESDTDSSEDDLSEDNLSEDVVDISEDDVDWRSKQVRPENDGSVESYSHPAPTPMFKCSVCPYEFTSVEEHIKLYHTQDEVELQIYCTTKENKQTLPTAQTQPQEVEVKSKNKSIDDYLQTVTSFRDYTERRYFTETGKRLGSIYTCKVCNRECLTYPTFRHHSCTAIVYSCDVCSATFRRKKDLTKHLLSEHNLPNVSLKKKDGLKTKDVKPPLSLVCEACGTVFNNKRSHLQHKKMHLPKIVDVEVNEDGTLADLNCKCCTFVAMNKKGLRTHMIVHAPYKKRRTEPTSEVSMQDPSTILTADNLTCHMCDRLFERTLDLHEHYKTHYYNKEDEKREVARLNNITFERANVDNPEKASLTFTCEICHLTLDKSIRVSHILSHSGDVRFTCEICNGNFYTREQFNLHMRAHNGDTPYMCRICKKRFADMHLLEKHSESHKENRNYPCRFCSKRFQRPSGTLAHERIHTGERPFTCQHCGLKFRLRGTRDMHSRIHTGVKPYNCEHCGMKFRSRYSFHAHVATHYDARDFKCTMCPKTFKTAAGLSSHKNNHTKPYACSVCKRKFNTSFAERKHRLSHSMGKNALKYVCDLCGACYARSFGLRDHLIAHNEEAMSKVPTREDATPQNIRDSLTPVVAPKAVHFVEIEETVLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447929;
- 90% Identity
- -
- 80% Identity
- -