Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010000054.1:444570-455499[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0057 1.2 11.8 0.1 2 21 32 51 31 52 0.89

2 15 0.7 1.4e+02 5.3 0.5 1 12 235 246 235 255 0.88

3 15 4.9e-06 0.001 21.5 1.1 1 23 506 529 506 529 0.97

4 15 0.13 26 7.6 2.3 1 23 554 576 554 576 0.96

5 15 6.7 1.4e+03 2.2 1.7 3 23 596 616 594 616 0.87

6 15 0.17 35 7.2 4.6 2 23 645 666 644 666 0.97

7 15 7.6 1.6e+03 2.0 0.3 1 10 700 709 700 721 0.73

8 15 0.00035 0.072 15.7 0.8 1 23 727 749 727 749 0.98

9 15 0.023 4.8 9.9 3.9 1 22 755 776 755 777 0.90

10 15 0.0074 1.5 11.5 0.5 1 23 783 805 783 805 0.98

11 15 0.2 40 7.0 2.7 1 23 811 833 811 833 0.92

12 15 0.00034 0.07 15.7 4.4 1 23 839 861 839 861 0.98

13 15 2.2e-05 0.0046 19.4 1.0 1 23 867 889 867 889 0.98

14 15 0.075 15 8.3 1.9 1 23 893 915 893 915 0.95

15 15 0.00024 0.049 16.2 0.2 1 23 924 946 924 946 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0057	1.2	11.8	0.1	2	21	32	51	31	52	0.89
2	15	0.7	1.4e+02	5.3	0.5	1	12	235	246	235	255	0.88
3	15	4.9e-06	0.001	21.5	1.1	1	23	506	529	506	529	0.97
4	15	0.13	26	7.6	2.3	1	23	554	576	554	576	0.96
5	15	6.7	1.4e+03	2.2	1.7	3	23	596	616	594	616	0.87
6	15	0.17	35	7.2	4.6	2	23	645	666	644	666	0.97
7	15	7.6	1.6e+03	2.0	0.3	1	10	700	709	700	721	0.73
8	15	0.00035	0.072	15.7	0.8	1	23	727	749	727	749	0.98
9	15	0.023	4.8	9.9	3.9	1	22	755	776	755	777	0.90
10	15	0.0074	1.5	11.5	0.5	1	23	783	805	783	805	0.98
11	15	0.2	40	7.0	2.7	1	23	811	833	811	833	0.92
12	15	0.00034	0.07	15.7	4.4	1	23	839	861	839	861	0.98
13	15	2.2e-05	0.0046	19.4	1.0	1	23	867	889	867	889	0.98
14	15	0.075	15	8.3	1.9	1	23	893	915	893	915	0.95
15	15	0.00024	0.049	16.2	0.2	1	23	924	946	924	946	0.97

Sequence Information

Coding Sequence: ATGGGGACATATATATGTCCGCTGTGCTGTGGAGGTGAGTTCTTGTCGCGGGACTCTTTGAGGGACCACCTACTGTGCTACACGGAGAGCCTCTACTGTCCAGAGTGCGGCAAATGTTTCGACAGTGTTGTCCGACTGGTGGAACACCTGGAGACTACCTGCGACGAGACCTGTACAGGGGATGATGACTCTACAAGGGTCAATCATACAAAAAAACAAggCCATGTTCTGCTCTACAGCGGGGCTCAGGAACTTGGCGGGGCCCTTCTGTACACTCAGACTAAACTGAAAGGTGCTAAGCTTATCTTGACGGgtttgttGATCAATCAGGGCCAAGTCAAAGCAGAACCAAACTACAACTTTTCATTCAGTCGTATTAGAAGCAAAATAAAAGGGGAAGACACTTTTCTTATGGATCTTGGTGACTATAACGAGGACGATGATGAAGACGATGAAGATATCCcagaaaacaatgtttatttccCTAACAATATCTCGGGAGATGTCATTGATTCCTCAGACAATGACGCCGATAGCTCAGAAAGTGATGACGATAGTTCAGAAGACGATCTTTCGGAAGGCGATCTCTCAGAAGATGTTGTTGATATCTCGGAGGACGACATCGATTTGCGCAGCGAGCAGGTCAGGCCGGAGAGTAATGACTCTATCGAGAGTTGCGCACGTCCGGCCCCCACACCCATGTTTAAGTGCTCTGTGTGTCCGTACGAGTTCACGTCCGTCGAGGAGCACATAAAACTGTATCACACACAAGATGAGGTTGAATTACAGGTCCCAAAGGAAgtttcaaaaaaccttttaagagaTGGAGAAAATATGATCAAGCCAATTTCAAACAACCAGGCAAGTGCCGATGAAACTACCGCTCAAAAGTTACTCCCTGATCCAAATAATGACCTTGAAATTCCGGGCTACCACCAAAAGGAGGACGTGGAAATGGTTGATGACCATCAAAATAGTCCACCGGAACTGGCAAACGATCACGTGCAATGTGAACCTCAAGATCATGATCAGGCAACTATTGATCATGGTACTCTTCCGAGTTCCTTGGGTGAAATAGTGTCTCAACTTTCTTTAGAACCTCAGATCAAAACCCTAGTTAGTGAGTGCGATATCGACAGAGAAAATCCTGCTGTAAACTTACGAGGTGTAACTAAAGAAACTTTGGTAACACCCGACAACTATTCCGAACAGGACACAGCATTAAGGCCCATATCACTGAAGCTTATTCCGTGTGGTGAGATCTATTGCACCACCAAGGAGAATAAACAAACACTACCAACGGTGAAAACTCAACCACAAGAAGTTGAAGTAAAgtcaaaaaataaatccatagaTGACTATCCTCAAACCGTGACTTCATTCAGAGATTACACTGAGAGACGTTATTTCACTGAAACTGGTAAACGTCTGGGTTCCATATACACCTGCAAGGTATGCAACCGGGAATGTCTCACATACCCTACCTTTAGACATCACTCCTGCACGGCGATTGTTTATTCCTGTGATGTGTGCAGTGAAACCTTCAGGCGAAAAAAAGACCTCACGAAACACTTGCTAAGTGAACACAATCTCCCAGATGTTTCTCTGAAAAAAAAGGATCGTTTGAAAACTAAGGATGTCTCCAAGCCGCCTCAATCCTTTGTCTGCGAGGCTTGCGGAACTGTCTTCAATAACAAGCGCTCCCATTTGCAGCATAAAAAAATGCACTTGCCTAAAATGGTCGACGTTGAATTTAACGAGGATGGCAGTCCAGCGGACCTGAATTGCAAATGCTGCACCTTTGTTGCGATGAACAAGAAAGGCCTTAGGACCCACATGATTGTGCACGCACCGTACAAGAAGAGAAGAACGGAACCTACCTCGGAGGTGAGCATGCAGGACCCGTCGACAATACTGACTGCCAACAACCTGACTTGCCACATGTGCGACCGGTTGTTCGAGCGAACTCTGGACCTCCACGAGCACTTCAAGACACATTATTACAACAAAGAGGATGAGAAGAGGGAACTGGCGAGGTTGAACAATATTACATTTGAACGCGCCAATGTGGACAACCCTGAAAAAGCTTCGTTGACCTTCACATGTGAGATCTGCCACCTGACTTTGGACAAATCTATTCGCGTGAGCCATATTCTCTCACATTCCGGTGACGTGCGTTTCACTTGCGAGATATGTAACGGTAATTTTTACACCCGTGAACAATACAACCTTCACATGCGCGCCCACAATGGGGACACACCTTATATGTGTAGAATCTGCAAGAAGAGGTTTGCCGACATGCATCTACTGGAAAAACACTGCGAGTCGCACAGAGAAAACAGAAACTACCCATGCCGGTTCTGTAGCAAGCGTTTTCAGAGGCCTAGCGGGACACTCGCCCACGAACGTATACACACAGGCGAACGCCCGTTCACATGCCAGCACTGCGGGTTAAAGTTTCGTCTGAGGGGGACGCGTGACATGCACAGTCGTATTCATACCGGTGTCAAACCTTATAACTGTGAACACTGCGGTATGAAGTTCAGGTCGAGGTATAGCTTCCACGCTCACGTTGCCACACATTACGACGCCCGCGACTTCAAGTGTACCATGTGCCCAAAGACCTTCAAGACGGCGGCGGGACTTTCTAGCCACAAGAATAACCACACAAAACCTTACGCTTGTTCTGTTTGTAAGCGCAAGTTCAACACCTCGTTTGCTGAACGTAAGCACAGGCTTTCTCATTCCACGGGGAAAAATATGCTCAAGTATGTGTGTGACCTCTGTGGGGCCTGCTACGCTCGGTCTTTCGGGCTCCGTGACCATATGATTGCTCACAACGAAGAGGCAACGGGTAAGGTGCCCGCCAGAGAAGATGCTACCCCTCAGAACATTAGAGATTCTTTGACGCCTGTAGTCGCCCCTAAAGCTGTGCATTTTGTTGAAATTGAAGAGACAGTGTTGTCTAGCTCTTGGCATAGTGCCGAGGGCGCATTGGCACTTGCAAGTCACTCTTTGAAACTCGCTTGCTTTAGGGAATATCGAGAGCGCCGAGACGAACCCAGGAGACAGCCATATGTGAGAATATGGTTTCTTGCTCTTCTTTCACACAAAcacagTTTCTCCAGAGTGGTTAGTGAGCGCTCTCAAGCCCATCCTGTCCCAGTTTCTCGAGAGTGGTTAGTGAGCGACTCTCAAGCCCACCTTGTCCCAGTTTCTCGAGAGTGGTTAGTGAGCGCTTTCAAGCCCATCCTGTCCCAGTTTCTCGATTGTGGTTAG
Protein Sequence: MGTYICPLCCGGEFLSRDSLRDHLLCYTESLYCPECGKCFDSVVRLVEHLETTCDETCTGDDDSTRVNHTKKQGHVLLYSGAQELGGALLYTQTKLKGAKLILTGLLINQGQVKAEPNYNFSFSRIRSKIKGEDTFLMDLGDYNEDDDEDDEDIPENNVYFPNNISGDVIDSSDNDADSSESDDDSSEDDLSEGDLSEDVVDISEDDIDLRSEQVRPESNDSIESCARPAPTPMFKCSVCPYEFTSVEEHIKLYHTQDEVELQVPKEVSKNLLRDGENMIKPISNNQASADETTAQKLLPDPNNDLEIPGYHQKEDVEMVDDHQNSPPELANDHVQCEPQDHDQATIDHGTLPSSLGEIVSQLSLEPQIKTLVSECDIDRENPAVNLRGVTKETLVTPDNYSEQDTALRPISLKLIPCGEIYCTTKENKQTLPTVKTQPQEVEVKSKNKSIDDYPQTVTSFRDYTERRYFTETGKRLGSIYTCKVCNRECLTYPTFRHHSCTAIVYSCDVCSETFRRKKDLTKHLLSEHNLPDVSLKKKDRLKTKDVSKPPQSFVCEACGTVFNNKRSHLQHKKMHLPKMVDVEFNEDGSPADLNCKCCTFVAMNKKGLRTHMIVHAPYKKRRTEPTSEVSMQDPSTILTANNLTCHMCDRLFERTLDLHEHFKTHYYNKEDEKRELARLNNITFERANVDNPEKASLTFTCEICHLTLDKSIRVSHILSHSGDVRFTCEICNGNFYTREQYNLHMRAHNGDTPYMCRICKKRFADMHLLEKHCESHRENRNYPCRFCSKRFQRPSGTLAHERIHTGERPFTCQHCGLKFRLRGTRDMHSRIHTGVKPYNCEHCGMKFRSRYSFHAHVATHYDARDFKCTMCPKTFKTAAGLSSHKNNHTKPYACSVCKRKFNTSFAERKHRLSHSTGKNMLKYVCDLCGACYARSFGLRDHMIAHNEEATGKVPAREDATPQNIRDSLTPVVAPKAVHFVEIEETVLSSSWHSAEGALALASHSLKLACFREYRERRDEPRRQPYVRIWFLALLSHKHSFSRVVSERSQAHPVPVSREWLVSDSQAHLVPVSREWLVSAFKPILSQFLDCG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447929;
90% Identity: -
80% Identity: -