Tgen011918.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000654.1:177211-181116[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2e-05 0.0038 19.6 0.6 1 23 102 124 102 124 0.96 2 16 2.7e-05 0.005 19.2 0.1 1 23 130 152 130 152 0.97 3 16 4.3e-05 0.0081 18.5 1.5 1 23 158 180 158 180 0.97 4 16 0.0011 0.2 14.1 6.4 1 23 186 208 186 208 0.96 5 16 0.00037 0.069 15.6 3.4 1 23 214 236 214 236 0.97 6 16 5.3e-07 9.9e-05 24.5 1.0 3 23 244 264 243 264 0.99 7 16 7.4e-07 0.00014 24.1 0.8 1 23 270 292 270 292 0.95 8 16 2.8e-06 0.00052 22.3 1.8 1 23 298 320 298 320 0.98 9 16 2.2e-05 0.0041 19.4 5.8 1 23 452 474 452 474 0.98 10 16 2.2e-05 0.0041 19.4 2.6 2 23 481 502 480 502 0.96 11 16 0.00025 0.046 16.1 1.9 1 23 508 530 508 530 0.94 12 16 0.0056 1 11.9 2.6 1 23 536 558 536 558 0.96 13 16 1e-05 0.0019 20.5 2.4 1 23 564 586 564 586 0.97 14 16 5.1e-07 9.6e-05 24.6 0.9 2 23 593 614 592 614 0.97 15 16 7.5e-07 0.00014 24.0 1.0 1 23 620 642 620 642 0.98 16 16 2.8e-05 0.0053 19.1 0.4 1 23 648 670 648 670 0.97
Sequence Information
- Coding Sequence
- ATGTTATTGACAAGCCTGGGACTGAAATCCACCAATAGAGGAAAGAAACATGACCCTTCTACTCTCAAACACACCATCTTTGTTAAAAGGAAAAGGACATGTGTTGTGACAGAGACAACTTTGTGTCCCAAGAGCTGCATGAAAAGTGATATTTTGGAATGTGACTCCCAATCATCAGAAGCCGTGTTTCAACACAGTAGTGATGGCATAAAATCAATGGAACTGGGGACTGCTGTCATGCCTTCAAGCCAACAGTCTTCAGATCAATCGCTGGACAAAGACTCCTCCAACTCTCGGCAACTTTTCCGGTGTCCAAAGTGCCCCAAGACGTTCCGGGCCCAGTCTGGTCTCAAGTATCATGAGGCATCACATCGTGGAGTGAAGCGGTTCCCTTGCCCTGTGTGCGGCAAAAGGTTCCTGGATTCTTCCCAACTAAGGTCTCACGCTCTGGTCCACTCTGTGGACAGACCCCACACTTGCCAAGTCTGTGGGAAAAGTTTCAAGAAACTGGCAGATGTGAATAAGCACACCCTGATCCACTCTGAACACCCAAACTATCTGTGCGACTTTTGCGGGAAGAGGTGCAATACCAAGAACTTCCTGAACCATCATATGAAAGTACATTCTGAGGAGAAGGATCACCATTGCCCCGAGTGCGACAAGAATTTCAGATGGCGATACAGCTTGGTGAGTCACATGCTGACACACACGTCTGAGCGACGACTGCTGTGTGAGGTGTGCAGCAAGGCCTTCAAGAGGAGAAGTGACCTTCTGCAACACATGAGGACACACACTGGAGAAAAACCCTTTTTGTGTAAATTCTGTGGGCGAGCCTTCTCGGACAAGTGGAACCTGACTCAGCACATTCGACTGCACACCGGGGACAAGCCATACAAGTGTGATATGTGTGGTGAGGCATTCACACACAATGTGACCCTTAGGAACCATCTCAAGCAACACACAGCACCTTCAGATGTTCAACCCAAGATTGTAACGGCTTCAAGCGGTCAACCGGTCAGCTCAAGAAATGCTTCTCTGAGAATCAAGAGAAAGCTGGTCCCTAGTAAGGGAACACAAACCGCAAGGTGTAGAGTCAGTATTAGCATAAGCCCCAAGAAGAGGAAAACTAAGAAACCAGTTGTCTCAAAGAAATCCaataaaatcaaaccaaataaGTTACGCAAGTCAAGAGTTAAGGAAAACCCATCAAGTGACAAGGAGATAGATTTGGCAACGAGTCTTTCTGTGCCAGGTAAAGAGGATCCTGACTCTACAGAGCCTTTCGAGTACGTTACAACAACTCTATCTGTGTGTGGCGAGGATGAGAATGTTCTGATGCACCCTCCCAAGCCTTATCAATGCTCTCACTGTTCCAAGTCTTTCACTAATCGCTACAGTCTGAGGTACCATGAATCCACGCACACTGGTGTGAAGCACTGCTTTTGTCCACAGTGTGGCAAAGGTTTCTTTAACATGTCAAGTCTCAAAGTACACCAACAAACCCACTCCTCTGAAAAACCCTACCTTTGTAACTTGTGCGGCAAGTCCTTCAAAATCAAGAATGACCTGAGCAAGCACCATGTGATACACACAGACCAGTTCCCGTACCTATGTAACGTGTGTGGCAAAACGTGGAAGACCAAGAGTCGCTTGTCCATGCACCTCCACACTCACTCCCCGGAAAGGAACCACATGTGTCCCGTTTGTGGCAAGTCCTTCCGCGGTAAGAACACCTATATGACACACCTCAAAACGCACAGCAACGAGCGACCCCTCTCTTGCCCTATTTGTGACAAggatttcaaactaaaaaaatccCTCAACAAGCACATGCGAGTTCACATCGGCAAAAAACCCTTTCAGTGCACATTCTGTGAGCGCGCTTTTTCCGACAAGTGGAACTTGACCCAGCACATCCGCCTGCACACAGGGGACAAGCCATATGTGTGTGCAGTGTGTGGGGAGGCATTCACTCACAATGTGACTTTAAGGAACCATGCAAAACAGCATCTGCCCCCTCCTGACATGCAGCCAAACGTTTCTTCTGTTCTACAGTAA
- Protein Sequence
- MLLTSLGLKSTNRGKKHDPSTLKHTIFVKRKRTCVVTETTLCPKSCMKSDILECDSQSSEAVFQHSSDGIKSMELGTAVMPSSQQSSDQSLDKDSSNSRQLFRCPKCPKTFRAQSGLKYHEASHRGVKRFPCPVCGKRFLDSSQLRSHALVHSVDRPHTCQVCGKSFKKLADVNKHTLIHSEHPNYLCDFCGKRCNTKNFLNHHMKVHSEEKDHHCPECDKNFRWRYSLVSHMLTHTSERRLLCEVCSKAFKRRSDLLQHMRTHTGEKPFLCKFCGRAFSDKWNLTQHIRLHTGDKPYKCDMCGEAFTHNVTLRNHLKQHTAPSDVQPKIVTASSGQPVSSRNASLRIKRKLVPSKGTQTARCRVSISISPKKRKTKKPVVSKKSNKIKPNKLRKSRVKENPSSDKEIDLATSLSVPGKEDPDSTEPFEYVTTTLSVCGEDENVLMHPPKPYQCSHCSKSFTNRYSLRYHESTHTGVKHCFCPQCGKGFFNMSSLKVHQQTHSSEKPYLCNLCGKSFKIKNDLSKHHVIHTDQFPYLCNVCGKTWKTKSRLSMHLHTHSPERNHMCPVCGKSFRGKNTYMTHLKTHSNERPLSCPICDKDFKLKKSLNKHMRVHIGKKPFQCTFCERAFSDKWNLTQHIRLHTGDKPYVCAVCGEAFTHNVTLRNHAKQHLPPPDMQPNVSSVLQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449817;
- 90% Identity
- iTF_01448787; iTF_01450795; iTF_01445847; iTF_01444990; iTF_01449817;
- 80% Identity
- -