Basic Information

Insect: Timema cristinae
Gene Symbol: -
Assembly: GCA_002928295.1
Location: CM009476.1:16420143-16424420[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.9e-05 0.0058 18.5 0.9 1 23 102 124 102 124 0.97

2 16 2.7e-05 0.004 19.0 0.4 1 23 130 152 130 152 0.97

3 16 0.00012 0.018 16.9 0.9 1 23 158 180 158 180 0.97

4 16 0.0031 0.45 12.5 6.2 1 23 186 208 186 208 0.96

5 16 5.2e-05 0.0076 18.1 2.4 1 23 214 236 214 236 0.98

6 16 4.5e-07 6.6e-05 24.6 1.0 3 23 244 264 243 264 0.99

7 16 5.9e-07 8.6e-05 24.2 0.6 1 23 270 292 270 292 0.96

8 16 0.025 3.6 9.6 0.2 1 13 298 310 298 311 0.93

9 16 1.9e-05 0.0027 19.5 5.8 1 23 433 455 433 455 0.98

10 16 1.9e-05 0.0027 19.5 2.6 2 23 462 483 461 483 0.96

11 16 0.00021 0.03 16.2 1.9 1 23 489 511 489 511 0.94

12 16 0.0047 0.69 11.9 2.6 1 23 517 539 517 539 0.96

13 16 8.5e-06 0.0012 20.5 2.4 1 23 545 567 545 567 0.97

14 16 4.3e-07 6.4e-05 24.6 0.9 2 23 574 595 573 595 0.97

15 16 6.4e-07 9.3e-05 24.1 1.0 1 23 601 623 601 623 0.98

16 16 2.4e-05 0.0035 19.1 0.4 1 23 629 651 629 651 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.9e-05	0.0058	18.5	0.9	1	23	102	124	102	124	0.97
2	16	2.7e-05	0.004	19.0	0.4	1	23	130	152	130	152	0.97
3	16	0.00012	0.018	16.9	0.9	1	23	158	180	158	180	0.97
4	16	0.0031	0.45	12.5	6.2	1	23	186	208	186	208	0.96
5	16	5.2e-05	0.0076	18.1	2.4	1	23	214	236	214	236	0.98
6	16	4.5e-07	6.6e-05	24.6	1.0	3	23	244	264	243	264	0.99
7	16	5.9e-07	8.6e-05	24.2	0.6	1	23	270	292	270	292	0.96
8	16	0.025	3.6	9.6	0.2	1	13	298	310	298	311	0.93
9	16	1.9e-05	0.0027	19.5	5.8	1	23	433	455	433	455	0.98
10	16	1.9e-05	0.0027	19.5	2.6	2	23	462	483	461	483	0.96
11	16	0.00021	0.03	16.2	1.9	1	23	489	511	489	511	0.94
12	16	0.0047	0.69	11.9	2.6	1	23	517	539	517	539	0.96
13	16	8.5e-06	0.0012	20.5	2.4	1	23	545	567	545	567	0.97
14	16	4.3e-07	6.4e-05	24.6	0.9	2	23	574	595	573	595	0.97
15	16	6.4e-07	9.3e-05	24.1	1.0	1	23	601	623	601	623	0.98
16	16	2.4e-05	0.0035	19.1	0.4	1	23	629	651	629	651	0.97

Sequence Information

Coding Sequence: ATGTTATTGACAAGCCTGGGACTGAAATCCACTTATAGAGGAAAGAAACGTGACCATTCTACTCTCAAACACACCATCTTTGTTAAAAGGAAAAGGACATGTGTTGTGACAGAGACAACTTTGTGTCCCAAGAGCTGCATGAAAAGTGATATTTTGGAATGTGACTCCCAGTCATCAGAGGCCGTGTTTCAACATATTGGTGATGGAATAGAATCATTGGAACTGGAGACTGCTGTCATGTCTTCAAGCCAACAGTCTTCGGATCAATCGTTGGACAAAGACTCCTCCAACTTTCATCAACTGTTCCAGTGCTCAAAGTGCCCCAAGACGTTCCGAGCCCAGTCTGGTCTCAAGTACCACGAGGCCTCACATGGTGGAGTGAAGCGGTTCACCTGCCCTGTGTGTGGCAAAAAGTTTCTGGATTCTTCTCAACTAAGGTCTCACTCTCTGGTCCACTCTGCGGACAGACCCCACACTTGCCAAGTCTGTGGGAAAGGCTTCAAGAAACTGGCAGATGTGAATAAGCACACCCTGATCCACTCTGAACACCCAAACTATCTGTGCGACTTTTGTGGAAAGAGGTGCAATACCAAGAACTTCCTGAACCATCATTTGAAAGTACATTCTGAGGAGAAGGATCACCAATGTCCCAAGTGCGACAAGAATTTCAGATGGCGATACAGCTTGGTGAGTCACATGCTCACACACACGTCTGAGCGACGACTGCTGTGTGAGGTGTGCAGCAAGGCCTTCAAGAGGAGAAGTGACCTTCTGCAACACATGAGGACACACACTGGAGAAAAGCCTTATTTGTGTACATTCTGTGGGAGAGCCTTCTCAGACAAGTGGAACCTGACTCAGCACATTCGACTGCACACTGGAGACAAGCCATACAAGTGTGATATGTGTGGTGAGGCATTCACACACAATATTGTAACGGCTTCGAGCGGTCAACCTGTCGGCTCAAGAAATGCTTCTCTGAGAATCAAGAGAAAGCTGGTCCCGAGTAAGGGAACACAAACCGCAAAGTGTAGAGTCACTATTAGCATAAGCCCCAAGAAgataaaaactaacaaaccCGTTGTCTCAAAGAAAGCcaataaaatcaaaccaaataaGTTACGCAAGTCAAGAGTTAAGAAAAACCCATCAAGTGACAAGGAGATAGATTTGGCAACAAGTCTTCCTGTGCCGGGTAAAGAGGATCCTGACTCTACAGAGCCTTTTGAGTATGTTACGACAACTCTATCTGTGTGTGGCGAGGATGAGAATGTTCTGATGCACCCTCCCAAGCCTTATCAATGCTCCCACTGTTCCAAGTCTTTCACTAATCGCTACAGTCTTAGGTACCACGAGTCCACGCACACCGGTGTGAAGCACTGCTTTTGTCCACAGTGTGGCAAAGGATTCTTTAACATGTCCAGTCTCAAAGTACACCAACAAACCCACTCCTCTGAAAAACCCTATCTTTGTAACTTGTGCGGCAAGTCCTTCAAAATCAAGAATGACCTGAGCAAGCACCATGTGATACACACAGACCAGTTCCCATACCTATGTAACGTATGTGGCAAAACGTGGAAGACCAAGAGTCGCTTGTCCATGCACCTCCACACTCACTCCCCGGAAAGGAACCACATGTGTCCCGTTTGTGGCAAGTCCTTCCGTGGAAAGAATACCTATATGACACACCTCAAGACTCACAGCAACGAGCGACCCCTCTCTTGCCCTATTTGTGACAAggatttcaaactaaaaaaatccCTCAACAAGCACATGCGAGTTCACATCGGCAAAAAACCCTTTCAGTGTACGTTCTGTGAGCGCGCCTTTTCTGACAAGTGGAACTTGACTCAGCACATCCGCCTTCACACAGGGGACAAGCCATATGTATGCGCAGTGTGTGGGGAGGCGTTCACTCACAATGTGACTTTAAGGAACCATGCAAAACAGCATAGTATGCCCCCTCCTGACATGCAGCCAAACGTTTCTTCGGTTCTACAGTAA
Protein Sequence: MLLTSLGLKSTYRGKKRDHSTLKHTIFVKRKRTCVVTETTLCPKSCMKSDILECDSQSSEAVFQHIGDGIESLELETAVMSSSQQSSDQSLDKDSSNFHQLFQCSKCPKTFRAQSGLKYHEASHGGVKRFTCPVCGKKFLDSSQLRSHSLVHSADRPHTCQVCGKGFKKLADVNKHTLIHSEHPNYLCDFCGKRCNTKNFLNHHLKVHSEEKDHQCPKCDKNFRWRYSLVSHMLTHTSERRLLCEVCSKAFKRRSDLLQHMRTHTGEKPYLCTFCGRAFSDKWNLTQHIRLHTGDKPYKCDMCGEAFTHNIVTASSGQPVGSRNASLRIKRKLVPSKGTQTAKCRVTISISPKKIKTNKPVVSKKANKIKPNKLRKSRVKKNPSSDKEIDLATSLPVPGKEDPDSTEPFEYVTTTLSVCGEDENVLMHPPKPYQCSHCSKSFTNRYSLRYHESTHTGVKHCFCPQCGKGFFNMSSLKVHQQTHSSEKPYLCNLCGKSFKIKNDLSKHHVIHTDQFPYLCNVCGKTWKTKSRLSMHLHTHSPERNHMCPVCGKSFRGKNTYMTHLKTHSNERPLSCPICDKDFKLKKSLNKHMRVHIGKKPFQCTFCERAFSDKWNLTQHIRLHTGDKPYVCAVCGEAFTHNVTLRNHAKQHSMPPPDMQPNVSSVLQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01449817;
90% Identity: iTF_01447749;
80% Identity: -