Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000787.1:203563-207546[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.9e-05 0.0043 19.6 0.6 1 23 102 124 102 124 0.96

2 16 4.4e-05 0.0099 18.4 0.1 1 23 130 152 130 152 0.96

3 16 0.00014 0.031 16.9 0.9 1 23 158 180 158 180 0.97

4 16 0.00099 0.22 14.2 6.4 1 23 186 208 186 208 0.96

5 16 0.00079 0.18 14.5 4.4 1 23 214 236 214 236 0.97

6 16 5e-07 0.00011 24.6 1.0 3 23 244 264 243 264 0.99

7 16 6.5e-07 0.00015 24.2 0.6 1 23 270 292 270 292 0.96

8 16 0.028 6.2 9.6 0.2 1 13 298 310 298 311 0.93

9 16 2.1e-05 0.0047 19.5 5.8 1 23 433 455 433 455 0.98

10 16 2.1e-05 0.0046 19.5 2.6 2 23 462 483 461 483 0.96

11 16 0.00023 0.052 16.2 1.9 1 23 489 511 489 511 0.94

12 16 0.0052 1.2 11.9 2.6 1 23 517 539 517 539 0.96

13 16 9.5e-06 0.0021 20.5 2.4 1 23 545 567 545 567 0.97

14 16 4.8e-07 0.00011 24.6 0.9 2 23 574 595 573 595 0.97

15 16 7.1e-07 0.00016 24.1 1.0 1 23 601 623 601 623 0.98

16 16 2.7e-05 0.006 19.1 0.4 1 23 629 651 629 651 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.9e-05	0.0043	19.6	0.6	1	23	102	124	102	124	0.96
2	16	4.4e-05	0.0099	18.4	0.1	1	23	130	152	130	152	0.96
3	16	0.00014	0.031	16.9	0.9	1	23	158	180	158	180	0.97
4	16	0.00099	0.22	14.2	6.4	1	23	186	208	186	208	0.96
5	16	0.00079	0.18	14.5	4.4	1	23	214	236	214	236	0.97
6	16	5e-07	0.00011	24.6	1.0	3	23	244	264	243	264	0.99
7	16	6.5e-07	0.00015	24.2	0.6	1	23	270	292	270	292	0.96
8	16	0.028	6.2	9.6	0.2	1	13	298	310	298	311	0.93
9	16	2.1e-05	0.0047	19.5	5.8	1	23	433	455	433	455	0.98
10	16	2.1e-05	0.0046	19.5	2.6	2	23	462	483	461	483	0.96
11	16	0.00023	0.052	16.2	1.9	1	23	489	511	489	511	0.94
12	16	0.0052	1.2	11.9	2.6	1	23	517	539	517	539	0.96
13	16	9.5e-06	0.0021	20.5	2.4	1	23	545	567	545	567	0.97
14	16	4.8e-07	0.00011	24.6	0.9	2	23	574	595	573	595	0.97
15	16	7.1e-07	0.00016	24.1	1.0	1	23	601	623	601	623	0.98
16	16	2.7e-05	0.006	19.1	0.4	1	23	629	651	629	651	0.97

Sequence Information

Coding Sequence: ATGTTATTGACAAGCCTGGGACTGAAATCCACCAATAGAGGAAAGAAACATGACCCTTCTACTCTCAAACACACCATCTTTGTTAAAAGGAAAAGGACATGTGTTGTGACAGAGACAACTTTGTGTCCCAAGAGCTGCATGAAAAGTGATATTTTGGAATGTGACTCCCAATCATCAGAGGCCGTGTTTCAACACAGTGGTGATGGAATAGAATCAATGGAACTGGGGACTGCTGTCATGCCTTCAAGCCAACAGTCTTCAGATCAATCATTTGACAAAGACTCCTCCAACTTTCAGCAACTTTTCCGGTGTCCAAAGTGCCCCAAGACGTTCCGGGCCCAGTCTGGTCTCAAGTATCATGAGGCATCACATCGTGGAGTGAAGCGGTTCGCTTGCCCTGTGTGCGGCAAAAGGTTCCTGGATTCTTCCCAACTAAGGTCTCACGCTCTGGTCCACTCTGTGGACAGACCCCACACTTGCCAAGTCTGTGGGAAAGGCTTCAAGAAACTGGCAGATGTGAATAAGCACACCCTGATCCACTCTGAACACCCAAACTATCTGTGCGACTTTTGCGGCAAGAGGTGCAATACCAAGAACTTCCTGAACCATCATATGAAAGTACATTCTGAGGAGAAGGATCACCATTGCCCCAAGTGCGACAAGAATTTCAGATGGCGATACAGCTTGGTGAGTCACATGCTCACACACACGTCTGAGCGACGACTGCTGTGTGAGGTGTGCAGCAAGGCCTTCAAGAGGAGAAGTGACCTTCTGCAACACATGAGGACACACACTGGAGAAAAACCCTATTTGTGTACATTCTGTGGGAGAGCCTTCTCAGACAAGTGGAACCTGACTCAGCACATTCGACTGCACACTGGGGACAAGCCATACAAGTGTGATATGTGTGGTGAGGCATTCACACACAACATTGTAACGGCTTCAAGCGGTCAACAGGTCAGCTCAAGAAATGCTTCTCTGAGAATCAAGAGAAAGCTGGTCCCGAGTAAGGGAACACAAACCGGAAGGTGTAGAGTCAGTAATAGCATAAGCCCCAAGAAGAGGAAAACTAAGAAACCAGTTGTCTCAAAGAAATCCaataaaatcaaaccaaataaGTTACGCAAGTCAAGAGTTAAGGAAAACCCATCAAGTGACAAGGAGATAGATTTGGCAACGAGTCTTTCTGTGCCGGGTAAAGAGGATCCTGACTCTACAGAGCCTTTCGAGTATGTTACAACAACTCTATCTGTGTGTGGCGAGGATGAGAATGTTCTGATGCACCCTCCCAAGCCTTATCAATGCTCTCACTGTTCCAAGTCTTTCACTAATCGCTACAGTCTGAGGTACCATGAGTCCACGCACACTGGTGTGAAGCACTGCTTTTGTCCACAGTGTGGCAAAGGTTTCTTTAACATGTCAAGTCTCAAAGTACACCAACAAACCCACTCCTCTGAAAAACCCTACCTTTGTAACTTGTGCGGCAAGTCCTTCAAAATCAAGAATGACCTGAGCAAGCACCATGTGATACACACAGACCAGTTCCCGTACCTATGTAACGTGTGTGGCAAAACGTGGAAGACCAAGAGTCGCTTGTCCATGCACCTCCACACTCACTCCCCGGAAAGGAACCACATGTGTCCCGTTTGTGGCAAGTCCTTCCGCGGAAAGAACACCTATATGACACACCTCAAAACACACAGCAACGAGCGACCCCTCTCTTGCCCTATTTGTGACAAggatttcaaactaaaaaaatcccTCAACAAGCACATGCGAGTTCACATCGGCAAAAAACCCTTTCAGTGCACATTCTGTGAGCGCGCTTTTTCTGACAAGTGGAACTTGACCCAGCACATCCGCCTGCACACAGGGGACAAGCCATATGTGTGTGCAGTGTGTGGGGAGGCATTCACTCACAATGTGACTTTAAGGAACCATGCAAAACAGCATCTGCCCCCTCCTGACATGCAGCCAAACGTTTCGTCTGTTCTACAATAA
Protein Sequence: MLLTSLGLKSTNRGKKHDPSTLKHTIFVKRKRTCVVTETTLCPKSCMKSDILECDSQSSEAVFQHSGDGIESMELGTAVMPSSQQSSDQSFDKDSSNFQQLFRCPKCPKTFRAQSGLKYHEASHRGVKRFACPVCGKRFLDSSQLRSHALVHSVDRPHTCQVCGKGFKKLADVNKHTLIHSEHPNYLCDFCGKRCNTKNFLNHHMKVHSEEKDHHCPKCDKNFRWRYSLVSHMLTHTSERRLLCEVCSKAFKRRSDLLQHMRTHTGEKPYLCTFCGRAFSDKWNLTQHIRLHTGDKPYKCDMCGEAFTHNIVTASSGQQVSSRNASLRIKRKLVPSKGTQTGRCRVSNSISPKKRKTKKPVVSKKSNKIKPNKLRKSRVKENPSSDKEIDLATSLSVPGKEDPDSTEPFEYVTTTLSVCGEDENVLMHPPKPYQCSHCSKSFTNRYSLRYHESTHTGVKHCFCPQCGKGFFNMSSLKVHQQTHSSEKPYLCNLCGKSFKIKNDLSKHHVIHTDQFPYLCNVCGKTWKTKSRLSMHLHTHSPERNHMCPVCGKSFRGKNTYMTHLKTHSNERPLSCPICDKDFKLKKSLNKHMRVHIGKKPFQCTFCERAFSDKWNLTQHIRLHTGDKPYVCAVCGEAFTHNVTLRNHAKQHLPPPDMQPNVSSVLQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01449817;
90% Identity: iTF_01447749;
80% Identity: -