Tcri028128.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- -
- Assembly
- GCA_002928295.1
- Location
- CM009480.1:49490196-49496570[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0022 28 6.4 0.1 21 52 136 167 127 167 0.88 2 5 1.3e-05 0.17 13.5 0.3 21 44 164 187 162 192 0.90 3 5 0.0023 29 6.3 0.1 21 44 192 215 188 223 0.86 4 5 0.035 4.5e+02 2.5 0.0 23 43 222 242 218 247 0.85 5 5 0.039 5e+02 2.4 0.0 21 45 248 272 245 280 0.80
Sequence Information
- Coding Sequence
- ATGGAACGAAGGTGGCAAACATTTGGTACAAGAAGACGAGAAGGGGATGTGGTCTTGGCATTAAAAACCAACAAGGGACCACTCTTGGATAACCAAAGGAACAAAGGAGGAAAACTATGGAGTGACTCATCTTCAGCCTCGACCAGCCCTAGAGCTTCCCCGATGCTAACCACAGACGTCCTTTTTCCCGTCGCTCTTTGTGAAATAGTCTACAAGCGTGAGCAGGCAGCCCCTCACAGTGACAGAAGTAGAGAAGATAAGGACATAAATGATAATGGGAGCAGACCCAAAACCAAACACAAGCAGCAACGCTATCACATCAGGAAGAAGAGGTACCTGTGCTCCTACTGCAACCTAACCTTCAACCGCAAAGAGACCCGCAACAGACATGTGTTTGTACACACGGGAGAGAAGCCATACAATTGCTCGGAATGTGGCGCGAAGTTTGTGCAGCGGGGACACCTGAAGAGACACGTGCTCATCCACAGGCATGAAAAACCGCACGCATGCCCAGACTGTCCGGCTCAGTTCAGAGACAAACGTAACCTTAACACGCACATGCTACAACACACAGGAGAGAAACCATTTGGTTGCTTGCTCTGTGACTCTCGGTTCAGTGACAGAAGTAACTTGAGGAGGCACGAGGCCATCCATACGGGTAAGCGTCCTTTTCCGTGTACATTGTGCAACGCTGTCTTTGCGAGGAAAGGTGACTTAAAGACGCATGCACTAGTGCATACTGGGGAAAGACCGTTTCAATGTCATATATGTGATTTCAAGTTTACTGTAAAAGGGAACTTGAACAAACACATACGTAAACACACAGAAGATAAACCTGTAAATTTGACTGTTCAAAAGAAAAGGACATCTTTGTAA
- Protein Sequence
- MERRWQTFGTRRREGDVVLALKTNKGPLLDNQRNKGGKLWSDSSSASTSPRASPMLTTDVLFPVALCEIVYKREQAAPHSDRSREDKDINDNGSRPKTKHKQQRYHIRKKRYLCSYCNLTFNRKETRNRHVFVHTGEKPYNCSECGAKFVQRGHLKRHVLIHRHEKPHACPDCPAQFRDKRNLNTHMLQHTGEKPFGCLLCDSRFSDRSNLRRHEAIHTGKRPFPCTLCNAVFARKGDLKTHALVHTGERPFQCHICDFKFTVKGNLNKHIRKHTEDKPVNLTVQKKRTSL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448907; iTF_01449139; iTF_01445940; iTF_01446166; iTF_01445945;
- 90% Identity
- iTF_01448907; iTF_01449139; iTF_01445940; iTF_01446166; iTF_01445945;
- 80% Identity
- iTF_01445945;