Basic Information

Insect: Timema bartmani
Gene Symbol: RREB1
Assembly: GCA_902151455.1
Location: CABFWB010001671.1:37243-52047[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.5e-05 0.0078 18.8 1.0 1 23 99 121 99 121 0.98

2 16 0.0001 0.023 17.3 0.1 1 23 138 160 138 160 0.98

3 16 1.7e-06 0.00039 22.9 2.7 1 23 166 188 166 188 0.99

4 16 2.8 6.3e+02 3.3 0.1 1 23 314 338 314 338 0.82

5 16 0.065 15 8.5 2.9 2 22 344 364 344 367 0.89

6 16 4.1 9.2e+02 2.8 0.4 1 20 428 447 428 449 0.80

7 16 0.019 4.4 10.1 0.1 1 23 627 649 627 649 0.97

8 16 0.025 5.7 9.8 0.3 1 23 657 679 657 679 0.99

9 16 0.0025 0.57 12.9 2.3 1 23 685 708 685 708 0.97

10 16 0.0015 0.33 13.6 2.1 1 23 1229 1252 1229 1252 0.95

11 16 0.0057 1.3 11.8 0.3 3 23 1547 1567 1546 1567 0.98

12 16 0.03 6.7 9.5 5.1 1 23 1573 1596 1573 1596 0.97

13 16 3 6.8e+02 3.2 1.2 1 17 1638 1655 1638 1656 0.93

14 16 0.84 1.9e+02 5.0 1.3 1 23 1763 1785 1763 1786 0.95

15 16 0.0059 1.3 11.8 0.5 3 23 1843 1863 1841 1863 0.96

16 16 0.013 3 10.6 5.9 1 23 1869 1891 1869 1891 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.5e-05	0.0078	18.8	1.0	1	23	99	121	99	121	0.98
2	16	0.0001	0.023	17.3	0.1	1	23	138	160	138	160	0.98
3	16	1.7e-06	0.00039	22.9	2.7	1	23	166	188	166	188	0.99
4	16	2.8	6.3e+02	3.3	0.1	1	23	314	338	314	338	0.82
5	16	0.065	15	8.5	2.9	2	22	344	364	344	367	0.89
6	16	4.1	9.2e+02	2.8	0.4	1	20	428	447	428	449	0.80
7	16	0.019	4.4	10.1	0.1	1	23	627	649	627	649	0.97
8	16	0.025	5.7	9.8	0.3	1	23	657	679	657	679	0.99
9	16	0.0025	0.57	12.9	2.3	1	23	685	708	685	708	0.97
10	16	0.0015	0.33	13.6	2.1	1	23	1229	1252	1229	1252	0.95
11	16	0.0057	1.3	11.8	0.3	3	23	1547	1567	1546	1567	0.98
12	16	0.03	6.7	9.5	5.1	1	23	1573	1596	1573	1596	0.97
13	16	3	6.8e+02	3.2	1.2	1	17	1638	1655	1638	1656	0.93
14	16	0.84	1.9e+02	5.0	1.3	1	23	1763	1785	1763	1786	0.95
15	16	0.0059	1.3	11.8	0.5	3	23	1843	1863	1841	1863	0.96
16	16	0.013	3	10.6	5.9	1	23	1869	1891	1869	1891	0.98

Sequence Information

Coding Sequence: ATGAAGCTACAAGACACAGGAAGAAAATCCAGAGGATCAGACATCGATATTTTAGAACATGACAACGAATATGAAAAGCTATCCAATGATAGCACAGACAATAAACCGTTTGAAGTTGCTAGTAAGGAATCCATAGCATTAAGCAAGAAAGGTTATGAAATACTTAAAGATATAACTGAAGcaaaaaatgataattataaaGAGTGCGATAGCTTGGATATGGCAGAATATGGTTCTCTTGATTGCCTGTCCCCAAATAGTGAAAGTAGTCAAATAGATGATTCAGATATGAAGTTTACCTGCCCAATCTGTGACACGGTTCTATCTTCCCAGCATGAGTTTACTTTACACATTCGCTCACACAACAATAATGCAGAGTCATTAGTTTATCCTCTAGCATGCTTAAAGAACTACACTTGCCGTATTTGTGGCAAAGGGCTAAGTTCATCCAGTTCATTGGATCGTCATGTGTTAGTCCACTCTGGTGAGCGGCCATTTAAATGCACGACATGTGGTGTTGCTTTCACAACAAATGGAAACATGCATAGGCATATGAGAACCCATAATCCCTCGCATGCCGGGGATAATCTGGTTTTGAATTCCAAATGTGAATACACCAGTTATGAGAGTGACGGTAGTTCTGATAGTGGAGGATCAAGCAATAACATATCTGACAATCCTAGGAAAAGTCCTCACTTGGACACTTCTCAAGCTGGACCTGCAAAGAGACGTAGAGTTGATAGTGATGGTTTTCTTATCGAATCAAACAACAACACCAATAAATTTTCTGAGCCATTATCATCAGTAAAATTGCATGTAGAAAATGGAATCAAGAGAAAGGCTTTTGATTTACTGACACCCCCTGATTATGAAGGAGAAGAAATTGTGAGGAGGAACGTAAACCCTGTTACATATCATCAACATGAATTTATTCAACAATTCCAATGTCCTGTTTGTAAACGAATTGATTTTGCTTCGCTATATGTGTTAGAGACTCATCTTGAAGAAAGGCATCCTGATTATAAGGCCACATGTCATCAGTgtgacttaatttttaaaaatcatcgaGCTTTAAATCTTCATCGTTTCATGGCCCAACATGATAATAGTGAAGAACACAACATTGGAAGGGTTAAGAAGAGTAAACATATTAATAGAGCATCCTCTGTCTTGGGTTTCAGAGACCTAACATTTGTAGACTTCTCGAGCGAAAAGTTCCCATACATTGCAAAAGTAATGTGTGAACAAAGTATGCATAGAGCAACTAGTGCCTTTCATAAGTTCCAATGCAAAAAGTGTGCGAGAGCTTTTCCGTGTGGTAGTGCCTTAAGCATTCACCGTCAGGCGTGCTTGACTTCATGTGAAAAAGTGGATTTCAACCACCCAAATGACCCTGATAGTTTTCATGGAGATGAATTTCCATCAAGTGATTGTGATACTCCAACAGATCTGAGCAGCAAAAATAAACCTGCACAGCATTTACGATACGAAAAATCTTCAGATTGTGAGTCTGAAGAAGAACAAAAACGAGAAGATTTTTTTGCCCATTTAGATCTGCAGACTAAATCAGTGTGTTTATCATCACCCTTGTCTTCAGAGGATTTCCGTAAAGAAGATAGGTTTGAAAATGATTCTTACTTTAATTCTGCCAATGGTAATAAGTGTGAGATTGGAAAAGATCTTGCGGATATTCAGAGCATTATATCTGTCACATCAGCAGGGGGGCTGCTTAATGACTTATCAAAATCTCCACAGCCCCATGGAAATGATATAACACCTCCAGATTCTGGAGTAAAAGCCTCAGATTCAGGAACAGGGGAAGAAGAACAGCAGGATTGTTTTGCATCAGAGTTtcgtaaaatgaaattaaaaggGGAATTTCCATGTCGTGTATGTACTCTCGTGTTTCCAAATTTACGTGCTCTCAAAGGTCATAATAGAGTTCATCTCACAGCCAGCTCAGGACTGTATCGATGTAACATGTGCCCATATTCCAATATCGATAAAGGAATCCTAGTGCGACACATGCGAACTCATAACGGGGACCGACCATATGAATGTGCTCTCTGCAACTACGCATTTACTACCAAGGCAAATTGTGAAAGGCATTTGCGTAACAGGCACTCAAAACTTTCTCGAGACGATGTAAAAAATTCTATTATATATCATCCTTCAGAAGATCCTATAAATGACCCTGAAATTCAGCCAAAGCTAACCACTCGAGAAGATGTTAAGAGATCTTTAGTTTTCAGCACCAACTTGTCAACTGATGACACCAACAACATGGATCTCTCTAACCAAAGCTTTACAGAGGAACATCAAAAAGATGGTCTAGcaaatttgcatgaaatttcaaataaactcTCATTTACTGATAATGAACCTAATACTATAGGAAAACCTACCTTGGATGATCACAATGAAGAAATAAATCATACCCCAACATTTTCTAATAATTCTCTACCAAAAACTCTAGTCCCTATAACAAATATATCTGATTCTAACATCAAACAGATTCGTCCATGGGAAACTCATGAAGTTGCAACAATGACTCATTTCAGAGACAACCAGGTTGATGAAGTTAATGATATTGAAACTGATAGTAACGATGATCAATCTGATCGTGAAGACAATCAGACAGCTGAAAATTCAAATGTCCTAGTCATTATTaccaaaaataactttaacacCAGTCATACTAACAACATTCTAACCAAATTACCTATTGATAACCAAAGAACATTGGAAGATCCCATTGAGACTATAATTCCATCagctattacaaataatttggaaaattctTACTCCAGCGATGTTGATATGAACGCTCCTTTAGATCTCAGTATGGATGCCCTAGACTTGAGTAAGAAGAAGTCAAATGAAAAACCACCTGACATTGTCACAAATATTAATGATGATTTTGAACCACAAGATTTGTCCAAAAAGTCTATGAAACACAATCCTGaatacaataacaacaacaaactCTCAAAGAAATCTCTATTTATTTCATCTCGGAAATCCCAACACTATgctaacattaataaaaatcatagtATTGCTCAAGAATTGTACAacaatttaaatcataaaattagtCCACCTCCAAGCCCAGGTCCAAATACGGTCCCAAAAATCGAGATGAAACCAGGGGGACTTTACACAGGAAGCTCGCATCTAAACCCTATTTATCTCAATAACAATGGTTTCCATTTTCCATCACAATCTTTCCCTTTGCACCATTATTTGATGCCTCCCCCACCTCATTCTCTCTTCTCAAATACAAACATTCATGAGCTTGCGGACATGAAGGAACGGATCCAAAAAGAATTAATTCGTGGTTTACAGCTTACATCAGGAGGTAAGCTTTTGGATCCAGTGACAGCAACTAATAAACTTCAAGCTTTCCACCAACAAGCTATTGTAGACTTTTCCAAGGGAAACATgaatttgaaaatgaaacatCCTGAAGGTGATATAAAACTGGAAGAAAGCAATCATATTGGGCCAATAGTAAGTAATGATTTAAAAGAAACTTCTaacaatgtaaacaaaaatgttaccAAAGTACCACCTTTACCAAAGACTAATAGAGAAAGAGATTCCACATCtgttaaaatgattataaaaaatggtGTTCTAATGCCAAAACAGAAGCAGAGAAGGTATCGAACTGAGAGGCCATTTGCATGTGAACATTGTTCTGCACGATTCACTCTTCGCTCTAATATGGAGAGGCACATAAAACAACAACATCCTCAGTTCTGGAGCCAACGTCAGAGAAACAGTTCTGGATCTGTTGGACGCAGAAGTCATCCAGCAGCAGTGCCGACCTCTGTCAACCAGGTTCTGACCAATCAACAGTCTCAAGACTCTAGGAGTTCACGAGATAGTTTCAGTCAAACTTCATCAAAAGGATCTCATGTATCTATAAATGTTGTTTCAAGTGACCCAACAGATTATAGATCCATGCCTTTACTTGAATGGAGGGGTGGTGAAAAGATGCCAAAGATAGAAGAATCCTACACCGAGGAAGTGTTGGATAATATTCACAAAACCAAAGATATACCTAGTGTTGGTGCtatcaacaatttaaataatatagctttTATTTCTGAGGAAGTAAGGTTTGCGATAGCTCAGCAGTTAAAATCAAAACTACACCAGCCTCCTGAAGTACCTCTAGGAGAGGTACCTGGCATAAAATGTGAGGCAAGTGGTGACATGGATGAAGAGGATGAAAATGATGGATTGGTGATTGATGAAGAAAAGGGTGAAGTTGAAGAAGGGAATGAAGAATGTAACCAGAAAGGGGAACAAACCAAAGAACAACAGAATGGCAGTAGGGATGAAGGAGTAGTGGATCTGGCAAGTGTATCAAGACTTTTGGACAATGCCACTACACAGAATCAAGCATTCCAGCAGTATTTCCAGGGAACACAAGATGGTGATGGGGAAGAGGAAGGAACAGAATACGGAAGGGAGGAAGCTAGTGAGGATGATGAAGAAGGACTAGTAGCTGGAAGCAATAGCGAAGGAAACAACTCGGGCAGTGATGAAAACAGatctgAGTCAGATATCAATCCAGGtacagaaaaaaagaagagtgcGTACTCCCTTGCTCCTAATAGAGTTGCGTGCCCATACTGCCTTCGCAAATTTCCGTGGTCCTCATCTTTGCGGCGACATGTCTTGACACATACAGGACAAAAGCCATATAAGTGTCCACATTGCCCACTGCTGTTCACCACAAAGTCAAACTGTGACCGTCATTTGCTCAGAAAACATGGCAGCACATCAGCCATATCTTCTAACAAGAGTAACAATGGTAATGAGACATCTCAAGGAAACGGTGCCCCAACAGGAGCATCAAATCCAAGCTATACGATGAGAAACGTTCCAGAGAGGCCTTTCAAGTGCAACTTCTGTCCAAGTTCTACGTTCTCGACGCAGAGCAACTTGAATGAAACACCTACCACTAGGAACACATGCTCCTCTGGGGATGAGACCTATCAACAAACAACCAGAACAATTGATAGTCGTGGTGCTGGAGATGATAGCCATGATAGTGGAAATGAAGATGTATCAGATGAAAGGTTGACCTATCCTAATCCCTTGAACAGAATCACTGAGATTGGTGAAGGGGACATCGAGAGCATGCTTGGTCATCCTGCAATAGATCTGAGAACTAACATTCCTTCACTTGGAGCTACACACGATATTGTTGTGCCAAAGACTTTAATAGCGCTCGAAATTCATGGGTCAACCACATCATCGGAGCTACCTTTTAAATGCCACTTGTGTGAAGGGAGTTACGCGGAAAGGCAGGAAGCTTTGGATCATATCCGGGAACATCACCCTACAGAGTTTGATCTACTTGTGACTAAAGGAGCACTGGAAGTATCTACACATGAGGAGAATAATGGGAATAGTCACATCACGTCACAGGAAGAAGGGAATGGAGGTGAAGAAAATCTGGAACAACTCAGAGGAAAGTTTCCAGACTATGCTAACAGAAAGGTAATGTGTGCATTCTGCCTGCGTCGATTCTGGTCCGCTGAAGATTTGCGGCGACACATGCGCACACATACAGGTGAACGACCCTTCTCATGTGACATCTGTCGAAGGCGCTTCACTCTGAAACATAGCATGCTGCGCCACCGTAAGAAACATAGCATCGCTGGCATTTCGTACGTGTCTCCCAACTCTGAAGATGTTTCCATTGTAAGTGGAGATGAAGACAACATTCAAACACCCCTCACACCTTCTCGCTCACTTTCAGATTCCTCAATTAAAACTCTTGAAAAACATGgcttaaatttaacaaatcatAACAATAACACCATCACCTCCACAAAAAGTTGTACATGGGAGAGCAATAAAAATGAATTGACAGTTTCAGCAGCACAAATTTTAAGTTCAAAGTTGTTATCAGAAAGAAAAGATGAAGCTGTTAACACAGAAGAAGATACTGACTTGATTGGGAATCTGTTGGGGATACAAGACAGGTCGATCATTGACAAAGTTCTCCTGTCCAAGTCTGCTGATGATGCTGCTAAGCTATTGGGTGTAAGAAACGCAAGTCAGGAGTAG
Protein Sequence: MKLQDTGRKSRGSDIDILEHDNEYEKLSNDSTDNKPFEVASKESIALSKKGYEILKDITEAKNDNYKECDSLDMAEYGSLDCLSPNSESSQIDDSDMKFTCPICDTVLSSQHEFTLHIRSHNNNAESLVYPLACLKNYTCRICGKGLSSSSSLDRHVLVHSGERPFKCTTCGVAFTTNGNMHRHMRTHNPSHAGDNLVLNSKCEYTSYESDGSSDSGGSSNNISDNPRKSPHLDTSQAGPAKRRRVDSDGFLIESNNNTNKFSEPLSSVKLHVENGIKRKAFDLLTPPDYEGEEIVRRNVNPVTYHQHEFIQQFQCPVCKRIDFASLYVLETHLEERHPDYKATCHQCDLIFKNHRALNLHRFMAQHDNSEEHNIGRVKKSKHINRASSVLGFRDLTFVDFSSEKFPYIAKVMCEQSMHRATSAFHKFQCKKCARAFPCGSALSIHRQACLTSCEKVDFNHPNDPDSFHGDEFPSSDCDTPTDLSSKNKPAQHLRYEKSSDCESEEEQKREDFFAHLDLQTKSVCLSSPLSSEDFRKEDRFENDSYFNSANGNKCEIGKDLADIQSIISVTSAGGLLNDLSKSPQPHGNDITPPDSGVKASDSGTGEEEQQDCFASEFRKMKLKGEFPCRVCTLVFPNLRALKGHNRVHLTASSGLYRCNMCPYSNIDKGILVRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHSKLSRDDVKNSIIYHPSEDPINDPEIQPKLTTREDVKRSLVFSTNLSTDDTNNMDLSNQSFTEEHQKDGLANLHEISNKLSFTDNEPNTIGKPTLDDHNEEINHTPTFSNNSLPKTLVPITNISDSNIKQIRPWETHEVATMTHFRDNQVDEVNDIETDSNDDQSDREDNQTAENSNVLVIITKNNFNTSHTNNILTKLPIDNQRTLEDPIETIIPSAITNNLENSYSSDVDMNAPLDLSMDALDLSKKKSNEKPPDIVTNINDDFEPQDLSKKSMKHNPEYNNNNKLSKKSLFISSRKSQHYANINKNHSIAQELYNNLNHKISPPPSPGPNTVPKIEMKPGGLYTGSSHLNPIYLNNNGFHFPSQSFPLHHYLMPPPPHSLFSNTNIHELADMKERIQKELIRGLQLTSGGKLLDPVTATNKLQAFHQQAIVDFSKGNMNLKMKHPEGDIKLEESNHIGPIVSNDLKETSNNVNKNVTKVPPLPKTNRERDSTSVKMIIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRNSSGSVGRRSHPAAVPTSVNQVLTNQQSQDSRSSRDSFSQTSSKGSHVSINVVSSDPTDYRSMPLLEWRGGEKMPKIEESYTEEVLDNIHKTKDIPSVGAINNLNNIAFISEEVRFAIAQQLKSKLHQPPEVPLGEVPGIKCEASGDMDEEDENDGLVIDEEKGEVEEGNEECNQKGEQTKEQQNGSRDEGVVDLASVSRLLDNATTQNQAFQQYFQGTQDGDGEEEGTEYGREEASEDDEEGLVAGSNSEGNNSGSDENRSESDINPGTEKKKSAYSLAPNRVACPYCLRKFPWSSSLRRHVLTHTGQKPYKCPHCPLLFTTKSNCDRHLLRKHGSTSAISSNKSNNGNETSQGNGAPTGASNPSYTMRNVPERPFKCNFCPSSTFSTQSNLNETPTTRNTCSSGDETYQQTTRTIDSRGAGDDSHDSGNEDVSDERLTYPNPLNRITEIGEGDIESMLGHPAIDLRTNIPSLGATHDIVVPKTLIALEIHGSTTSSELPFKCHLCEGSYAERQEALDHIREHHPTEFDLLVTKGALEVSTHEENNGNSHITSQEEGNGGEENLEQLRGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHSIAGISYVSPNSEDVSIVSGDEDNIQTPLTPSRSLSDSSIKTLEKHGLNLTNHNNNTITSTKSCTWESNKNELTVSAAQILSSKLLSERKDEAVNTEEDTDLIGNLLGIQDRSIIDKVLLSKSADDAAKLLGVRNASQE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445928;
90% Identity: iTF_01447850; iTF_01449919;
80% Identity: -