Tbar028391.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010002516.1:55697-64006[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.084 19 8.1 2.5 3 20 226 243 224 245 0.93 2 14 0.00014 0.031 16.9 0.3 1 20 254 273 254 274 0.96 3 14 0.0086 1.9 11.2 4.6 1 20 282 301 282 304 0.95 4 14 3.4e-06 0.00076 22.0 0.6 2 23 311 332 310 332 0.97 5 14 0.00013 0.028 17.0 1.9 1 23 411 433 411 433 0.96 6 14 0.019 4.2 10.2 0.1 2 21 442 461 441 462 0.93 7 14 0.0014 0.32 13.7 4.3 1 20 511 530 511 533 0.92 8 14 0.049 11 8.9 0.5 1 23 538 561 538 561 0.92 9 14 0.00012 0.027 17.1 0.6 1 23 567 589 567 589 0.96 10 14 0.048 11 8.9 5.4 1 23 597 619 597 619 0.98 11 14 0.00049 0.11 15.1 0.7 3 23 627 647 625 647 0.97 12 14 0.00064 0.14 14.8 0.8 1 23 653 676 653 676 0.94 13 14 0.0041 0.92 12.3 0.3 1 23 689 711 689 711 0.95 14 14 0.00096 0.22 14.2 0.0 1 23 782 804 782 804 0.98
Sequence Information
- Coding Sequence
- ATGGATGCTGAAGTAACATTGTGTGAAGAAGAACAAATTAATCCGATCGTTGGCCCGTCTTTTAGTGGGCATTGTTCAAATTCGGTACAAAACGATGCCTTGCTCAATTATGAAGGCAGTGCAATGGTTGTGTATCAAGCAGATGTTGAAATGAGTGAAGACATTTCTACTccacaagtgaaatgcttagAATTTTACCATGACAGTGGAGAATTGAATCAGGTGGACCTATCAACACTAAGTAGCTCTGCTACTTATTTAGGGAACGTTAGTGCTGAGCTTGGGACTGAAAATACTGAGACTACTTCACACGTTAACAGCATAGGAATGTATGTGGAAACTGAACCGAAGGACACCAACTCAAATTCTCATGACAAGAATAATTTCCCAAAAgcttaccaaaataatattctgaaagTAGATATAAATGTTACTTCCAAACCTGAAGGTTCCATCGCATATCAGAACAACAAGGTCAAGGAGTGTGTTTTAGAGGAATGCGATCAAGAACAAACATTTTGTCACCATCGGTCCATTGTTACTGACAATGTTATGGTGAAATCTGAAAACATTGAACCTTCGACAACTACAGATGATGAAAGTATGGCCGTGGAAGCTCTTCAGCAGCTCGGAGGTGGGGACCTACTATATTCAAACCTCAACTCGCTCCAGCATTGCTACATCTGCGGCTCAAAGTTCCACTCCAGAGACAGCTTTCAGAAGCACCTTTCCTTGTGCGCCGAGACGGGGATGGCCGCTCACACTTGCAGTGTCTGCAGGGAGACCTTTATACGCAAGTCAGACCTGGAGAACCACCTAGTGTGTCACCAGGTGGACAGGCCCTATGCCTGCAAGATATGCAGTACCTTGTTCTGCAGGAAGGCAGAGCTCCAGAATCACATGACGTGCCACAACGTCACCAGGCCTCTCAAATGCCCGCAGTGTGGGACCGATTTCCAACGGTTGTCGAGTCTCACCAATCACATGAAGATACATAACTACCCCCCGGGTAAAGCCGTTGGTTTGTTTGATCTCCGGTCAGATGGCAAACCTGTATCAATGCCATCAACACAGGAGGGGAAATTAAAGTATGAAGAATCGTCAGCAAGTGTCAAACCTTTGCAAGTCGAATCTATGCCCTATATCATGTCGCAGGGATGCCATCCTAAAGAAATGTTCTCGGCTCAAAGCCCCGAGCAAGACTTGCCAAAAGCTGAGGATAAACGCCCCCACATCTGCCGGCATTGCGGTACGGCCTTCGCCCGTCTCAAGGCCCTCCAGTCGCACGTCCGCCTGCATGAGGACAATTGGGGGGCCCCGTTGTACTGCGAGAGATGTGAGGAGAATTTCCCCGATGAAATTTCTCTTAACCGACATCAGTTGAGATGCACCGGACCGATGACTCTGCCTCATCGGAATGTGAACGGGAGCTTGCAGCCGACTCAAAACCCGACGCCGCCGACTGGACCCTATACAAAATCGTTTGAAAATGGTGTTGGTGCTGcggaaacaaaaacaaaattgggAAAACATTGCTGTGAAGAATGTGAGAAGAGGTTTGCcactaaacaaaaactattcaGACACATGTGGGTGCACAGAAGAAAGCAGTATGTATGCGAGGTGTGCGGGTGCGCAGTGACGAGTCAGCAAGGTCTAGACGAGCATCGCCACGCCATGCACCCAGGCGAGAATCGACACATATGTTTCCAGTGTGGCAAGAGCTTTGTGAGCCGTCAGGGCCTCTGGGAGCACGGCAGGGTCCACGGTCGTGGACCCCCAGGGGTGTTCCATTGTCAGCAATGCTTCAAGCAGTTCACAAGCAGACAaGGGTTTCTCATTCATAACCGAACACACACGGGTGAACGCCCTTACGGGTGCAAGTTTTGCACCAAGGCCTTCCGGGACGGCGGTACACTCCGAAAGCACGAGCGGATACACACCGGAGAGCGGCCCCACGCTTGCCCCCTCTGTCACCGCGCGTTCAACCAGAAGGTGGTGCTGCGGGAGCATGTGAGATGGGTGCACGCGGCCAACAAGTCCAATAACGATGTACCCCACATCTTCTCGTGTCAGCTGTGTGGCCAAACCCTCGGAGACAGAGAGGAACTGTGCGCCCATATCGTCCAACACAGTGACCAGATGGCGGCTGCCGCCAAAGCTTTGACCGCAAAGACCACACCGCCTTCATCAACGGAAATGTGCGCCGATATGACCGCACAAGCATCTTCGGCGACTGATTCTTACATTACATCAAAGTATTTAGTTCCAAACGGACCGATCACGATTAATAAACCAGAAGGTGGCGTAATCTCATCGCGTATAAAGATGGAGGCCAGGGATTATGTTTGTGACATGTGTGGGGAAGGTTTTGCATTGAAGGAAGGTCTTTTGAACCATGTTTTAATTCACATTTGA
- Protein Sequence
- MDAEVTLCEEEQINPIVGPSFSGHCSNSVQNDALLNYEGSAMVVYQADVEMSEDISTPQVKCLEFYHDSGELNQVDLSTLSSSATYLGNVSAELGTENTETTSHVNSIGMYVETEPKDTNSNSHDKNNFPKAYQNNILKVDINVTSKPEGSIAYQNNKVKECVLEECDQEQTFCHHRSIVTDNVMVKSENIEPSTTTDDESMAVEALQQLGGGDLLYSNLNSLQHCYICGSKFHSRDSFQKHLSLCAETGMAAHTCSVCRETFIRKSDLENHLVCHQVDRPYACKICSTLFCRKAELQNHMTCHNVTRPLKCPQCGTDFQRLSSLTNHMKIHNYPPGKAVGLFDLRSDGKPVSMPSTQEGKLKYEESSASVKPLQVESMPYIMSQGCHPKEMFSAQSPEQDLPKAEDKRPHICRHCGTAFARLKALQSHVRLHEDNWGAPLYCERCEENFPDEISLNRHQLRCTGPMTLPHRNVNGSLQPTQNPTPPTGPYTKSFENGVGAAETKTKLGKHCCEECEKRFATKQKLFRHMWVHRRKQYVCEVCGCAVTSQQGLDEHRHAMHPGENRHICFQCGKSFVSRQGLWEHGRVHGRGPPGVFHCQQCFKQFTSRQGFLIHNRTHTGERPYGCKFCTKAFRDGGTLRKHERIHTGERPHACPLCHRAFNQKVVLREHVRWVHAANKSNNDVPHIFSCQLCGQTLGDREELCAHIVQHSDQMAAAAKALTAKTTPPSSTEMCADMTAQASSATDSYITSKYLVPNGPITINKPEGGVISSRIKMEARDYVCDMCGEGFALKEGLLNHVLIHI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447822;
- 90% Identity
- iTF_01446918;
- 80% Identity
- -