Tdou038527.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010005517.1:1400-7707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.05 12 8.8 2.3 2 20 220 238 219 240 0.93 2 12 3.9e-05 0.0092 18.6 0.6 1 20 249 268 249 269 0.96 3 12 0.0072 1.7 11.5 4.6 1 20 277 296 277 299 0.95 4 12 2.8e-06 0.00066 22.2 0.6 2 23 306 327 305 327 0.97 5 12 0.00027 0.065 16.0 1.6 1 23 406 428 406 428 0.96 6 12 0.0032 0.75 12.6 0.2 2 21 437 456 436 457 0.93 7 12 0.0012 0.28 14.0 4.3 1 20 506 525 506 528 0.92 8 12 0.047 11 8.9 0.6 1 23 533 556 533 556 0.92 9 12 0.0001 0.024 17.3 0.6 1 23 562 584 562 584 0.96 10 12 0.013 3.1 10.7 4.9 1 23 592 614 592 614 0.98 11 12 0.00041 0.097 15.4 0.7 3 23 622 642 620 642 0.97 12 12 0.27 65 6.5 0.1 1 13 648 660 648 661 0.88
Sequence Information
- Coding Sequence
- ATGGATGCTGAAGTGACAGTGTGTGAAGAGGAACAAATTAATCCTATCGTCGGCCCGTCTTTTAGTGGACATTGTTCAAATTCGGTACAAAACGATGCCTTGCTTAATTTTGAAGGCAGTGCAATGGTTGTGTATCAAGCTGATGTTGAATTGAGTGAAGACATTTCTACACCACAAGTGAAATGCTTAGAATTTTACCATGACAGTGGAGAATTGAATCAGGTGGACCTACCATCACTAAGTAGCTCTGCTACTTATTTAGGAAACGTTAGTGCTGAGTTTGGGACTACTTCACACGTTAACAGCATAGGAATGTATGTGGAAACGGAACAGAAGGACACTCACTCAAATTCTcatgacaataataatttcCCAAAAGCTTACCAagacaatattttgaaagtagATATTAATGTAACTTCCAAACCTGAAGGTTCCATCACATATCAGAATAACAATGTCAACGAGAGTGTTTTAGAGGAATGTGATCAAGAACAAACATTTTATCACCATCGGTCTAACATGACTGACAATGTTAGGGTGAAATCTGAAAACATTGAGCCTTCGACAACTACAGATGATGAGAGTATGGCCGTGGAAGCCCTTCAGCAGCTCGGAGGTGGGGACCTACTATATTCAAACCTCAACTCACTCTTGCATTGCTACATCTGCGGCTCAAAGTTTCACTCTAGAGACAGTTTTCAGAAGCATCTCTCCTTGTGCGCCGAGACGGGGATGGCCGCTCACACTTGCAGCGTCTGCAGGGAGACCTTTACACGCAAGTCAGACCTGGAGAACCACCTAGTGTGTCACCGGGTGGACAGGCCCTATGCCTGCAAGATATGCAGTACCTTGTTCTGCAGGAAGGCAGAGCTCCAGAATCACATGACATGCCACAACGTCACCAGGCCTCTCAAATGCCCGCAGTGCGGGACCGATTTCCAACGATTGTCGAGTCTCACCAATCACATGAAGATACATAACTACCCCCCGGGTAAAGCCGTTGGTTTGTTTGAACTCCGGTCAGATGGCAAACCTGTATCAATGCCGTCAGCACAGGAGGGGAAATTAAAGTATGAAGAATCGTCAGCAAGTGTCAAACCTTTACAAGGTATACAACCTTTGACAACGTTATCCTTGGGATGCCATCCTGAAGAAATGTTCTTGACTCAAAGCCCCGAGCAAGACTTACCAAAAGCCGAGGATAAACGCCCCCACATATGCCGGCATTGCGGTACGGCCTTCGCCCGGATCAAGGCCCTCCAGTCGCACGTCCGCCTGCATGAGGACAATTGGGGGGCCCCGTTGTACTGCAAGAAATGTGAGGAGAATTTCCCCGATGAAATTTCTCTTAACCGACATCAGTTGAGATGCACCGGACCGATGACTCTGCCTCATGGGAATGTAAACGGGAGCTTGCAGTCGACTCAAAACCCAACGCCGCCGACTGGACCCTACACAAAATCGTTTGAAAACGGAGTCTGCGCTGCGGAAACAAAGACCAAATTGGGGAAACATTGCTGTGAAGAATGTGAGAAGAGGTTTGCcactaaacaaaaactattcaGACACATGTGGGTACACAGAAGAAAGCAGTACGTATGCGAGGTGTGCGGGTGCGCGGTGAAGAGCCAGCAAGGCCTAGACGAGCACCGCCACGCCATGCACCCGGGCGAGAATCGACACATATGTTTCCAGTGTGGCAAGAGCTTTGTGAGCCGTCAGGGCCTCTGGGAGCACGGCAGGGTCCACGGTCGTGGACCCCCTGGGGTGTTCCATTGTCAGCAGTGCTCCAAGCAGTTCACGAGCCGACAAGGGTTTCTCATTCATAACCGAACACATACGGGTGAACGCCCTTACGGTTGCAAGTTTTGCACCAAGGCCTTCCGGGATGGCGGTACACTCCGAAAGCACGAGCGGATACACACCGGAGAGCGGCCCCATGCTTGCCCACTCTGTCACCGCGCGTTCAACCAGAAGGTACGTGGATGGGTCGGCCGTTTTAAGAGCAAAACCTTGGCATGA
- Protein Sequence
- MDAEVTVCEEEQINPIVGPSFSGHCSNSVQNDALLNFEGSAMVVYQADVELSEDISTPQVKCLEFYHDSGELNQVDLPSLSSSATYLGNVSAEFGTTSHVNSIGMYVETEQKDTHSNSHDNNNFPKAYQDNILKVDINVTSKPEGSITYQNNNVNESVLEECDQEQTFYHHRSNMTDNVRVKSENIEPSTTTDDESMAVEALQQLGGGDLLYSNLNSLLHCYICGSKFHSRDSFQKHLSLCAETGMAAHTCSVCRETFTRKSDLENHLVCHRVDRPYACKICSTLFCRKAELQNHMTCHNVTRPLKCPQCGTDFQRLSSLTNHMKIHNYPPGKAVGLFELRSDGKPVSMPSAQEGKLKYEESSASVKPLQGIQPLTTLSLGCHPEEMFLTQSPEQDLPKAEDKRPHICRHCGTAFARIKALQSHVRLHEDNWGAPLYCKKCEENFPDEISLNRHQLRCTGPMTLPHGNVNGSLQSTQNPTPPTGPYTKSFENGVCAAETKTKLGKHCCEECEKRFATKQKLFRHMWVHRRKQYVCEVCGCAVKSQQGLDEHRHAMHPGENRHICFQCGKSFVSRQGLWEHGRVHGRGPPGVFHCQQCSKQFTSRQGFLIHNRTHTGERPYGCKFCTKAFRDGGTLRKHERIHTGERPHACPLCHRAFNQKVRGWVGRFKSKTLA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_01445054;
- 80% Identity
- -