Tbar005168.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000211.1:343252-346624[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.1e-05 0.0091 18.6 0.9 2 23 45 67 44 67 0.94 2 19 0.00053 0.12 15.0 7.5 3 23 71 91 70 91 0.98 3 19 0.025 5.7 9.8 0.6 2 23 98 119 97 119 0.96 4 19 0.046 10 9.0 0.3 1 23 125 147 125 147 0.96 5 19 6.1e-07 0.00014 24.3 3.1 1 23 153 175 153 175 0.99 6 19 2.4e-06 0.00054 22.4 0.3 1 23 180 202 180 202 0.99 7 19 5.8e-05 0.013 18.1 4.4 1 23 208 230 208 230 0.97 8 19 7.1e-07 0.00016 24.1 2.4 1 23 236 258 236 258 0.98 9 19 1.6e-05 0.0036 19.8 6.9 1 23 264 286 264 286 0.98 10 19 0.036 8 9.3 5.0 1 23 359 382 359 382 0.93 11 19 0.0026 0.59 12.9 2.7 1 23 386 408 386 408 0.93 12 19 0.53 1.2e+02 5.6 0.8 2 23 415 436 415 436 0.96 13 19 0.002 0.46 13.2 0.3 1 23 442 464 442 464 0.95 14 19 0.00013 0.029 17.0 4.7 1 23 470 492 470 492 0.99 15 19 0.002 0.44 13.2 1.4 1 23 503 525 503 525 0.98 16 19 0.00019 0.043 16.4 1.2 1 23 532 554 532 554 0.97 17 19 9.5e-07 0.00021 23.7 0.3 2 23 561 582 561 582 0.97 18 19 6.2e-08 1.4e-05 27.4 1.5 1 23 588 610 588 610 0.98 19 19 1.1e-05 0.0024 20.4 2.6 1 23 616 638 616 638 0.99
Sequence Information
- Coding Sequence
- ATGAAGCAGAACTCTAAATCTCCCAAGGTGCCCAAAGGGGACATTAAATCTCTTTCTGGAAGTTTAGCAGTAGAGTTTAGACATTGCAACACGAATGAGAACCAGTCGTCACCTGGTGGTGGTAAAATATTGACGTGTTCCATGTGCAAAGAAAGGTTCACACGCCCAAGACAGCTGCAGCTGCACATGGGTAAGATGCATAAAAACGCATGCGAAGTGTGTCACAAAGTGTTTAGTCGGAAACATCAGCTCCACTACCATAGGAAGTCACATTTTAAAGACAAGAGTTTGATTTGTGACATTTGTGGATACGCGACATATCTAAAGCGTTTCTTCGAGTCTCATAGGCGAAGACATTTTGGCGACTACACATTCAAATGTGACCAGTGTACCTCCGGGTTCTTCTCAAATGCGGAGCTTTTAGAACACAAGGTGGTCCACGCCGGCTTGCGGCCATACCAATGCGAGTTATGCGGCAAGACCTTCAGTAAGCGTCGTTATCTCTCGACCCACATGCGTTACCATGATAGTAACATATACGTGTGCGACATTTGCGGAAAGTCCATCACTCAGAAGAACTATCTAATAATCCACCTACGAAGACACATGGGAGACAAGCGGCACATCTGCGACTTCTGCGGAAAGGCGTTCTGCTCGTCAAACTACCTCAGACTCCACCGCCGCGTTCATACGGGGGAGAAACCCTACAACTGCTCTCACTGTGGCAAGGGCTTCGCTCAGCGCTCGGCGCTCAACGTTCACATCAGGCACCACACAGGAGAGAAACCCCACAAGTGTGATACCTGCGACAAGTGTTTCTCACAGCGCTCGGCGCTCAATGTCCACGTGAGGCATCACACGGGAGAGAAGCCCTTTGTTTGTGCTCTGTGCAGCCAGAGAGCCTTTCTAGACGATTATACACGCCTCGGTAGAAATAATAGCACCACAAAGGAAGAGAGACTAAGAGGGTCAGTAAAAGTGATAAATCTCGCCTCCGAATCAAACTTTGGCAAGAAGATTCCTTCAAAGCGAGTTGCCTCGGAAACTGTCAAGTCTCGGAAGCAGGAAAGAACGTTCTCGTGCACGGGCTGCAGTAAGAAGTTTGTACGGGAACACAAATTGCGCTGCCACATGGACAATGTGCACAACAAGGTTCACAAATGTACGGTTTGCGGGCAGACGTTCGAGAAAGCGCACCAACTGAGCTATCACAGTGTGGTGcacaaaaaatctaaaacagaAGTATGTGACATTTGTGGTTATACCGCGTATTACAGGTGTGTGATAGAGAATCATAAGAGGACACATTTCTGGGGGAATGAGTTCAGTTGCGACTTGTGCCAGAGAAGCTTTCAGGGTGCATATGCCCTCATGAAACATAAAGTGGTTCACACCGATGTGAAGCAATACCAGTGCGACTTGTGCGGCCGACTATACGTTCACAAGTGTAATCTGACCGCGCATAGGAAGACCCACATCTCGGGATATAAACGCCCCACGGATGGTCACCAGTGCGAGGTCTGCGGGAGAAAGTTCTTGGCGAAGAACTCGCTGGTGAAGCACGTGAGGTCTCATATCGGCCAGAAACGTTGGTACAAGTGCGACGTATGTGGCAAGGACCTTTCGACGCGAGAGTCACTCCAGGTCCACTGCAGAATCCACACAGGCGAGAAGCCAGAGGTTTGCAATTACTGCGGGAAGACGTTCAGTTCCCGCGTGGGGTTGAAGCTTCATGTTCGCGTTCATACCGGAGAGAAACCGTTCACTTGCAAGGAGTGTGGGAAGAGCTTCACTCAACAGTCGACACTTATCGTCCACAAGAGACTCCATACAGGACAGCGTCCATACGAGTGTCTGAAATGTGATAAGAGGTTCATAACCAAGACAATGATGAACAATCACATGAAGCGTCACGTGTGA
- Protein Sequence
- MKQNSKSPKVPKGDIKSLSGSLAVEFRHCNTNENQSSPGGGKILTCSMCKERFTRPRQLQLHMGKMHKNACEVCHKVFSRKHQLHYHRKSHFKDKSLICDICGYATYLKRFFESHRRRHFGDYTFKCDQCTSGFFSNAELLEHKVVHAGLRPYQCELCGKTFSKRRYLSTHMRYHDSNIYVCDICGKSITQKNYLIIHLRRHMGDKRHICDFCGKAFCSSNYLRLHRRVHTGEKPYNCSHCGKGFAQRSALNVHIRHHTGEKPHKCDTCDKCFSQRSALNVHVRHHTGEKPFVCALCSQRAFLDDYTRLGRNNSTTKEERLRGSVKVINLASESNFGKKIPSKRVASETVKSRKQERTFSCTGCSKKFVREHKLRCHMDNVHNKVHKCTVCGQTFEKAHQLSYHSVVHKKSKTEVCDICGYTAYYRCVIENHKRTHFWGNEFSCDLCQRSFQGAYALMKHKVVHTDVKQYQCDLCGRLYVHKCNLTAHRKTHISGYKRPTDGHQCEVCGRKFLAKNSLVKHVRSHIGQKRWYKCDVCGKDLSTRESLQVHCRIHTGEKPEVCNYCGKTFSSRVGLKLHVRVHTGEKPFTCKECGKSFTQQSTLIVHKRLHTGQRPYECLKCDKRFITKTMMNNHMKRHV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449813; iTF_01446812;
- 90% Identity
- iTF_01449813; iTF_01446812;
- 80% Identity
- -