Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010000073.1:148854-152148[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 6e-05 0.014 18.1 1.2 2 23 45 67 44 67 0.94

2 19 0.00054 0.13 15.0 7.5 3 23 71 91 70 91 0.98

3 19 0.026 6.2 9.8 0.6 2 23 98 119 97 119 0.96

4 19 0.025 6 9.8 0.3 1 23 125 147 125 147 0.97

5 19 6.2e-07 0.00015 24.3 3.1 1 23 153 175 153 175 0.99

6 19 2.4e-06 0.00058 22.4 0.3 1 23 180 202 180 202 0.99

7 19 5.9e-05 0.014 18.1 4.4 1 23 208 230 208 230 0.97

8 19 7e-06 0.0017 21.0 4.4 1 23 236 258 236 258 0.97

9 19 6.2e-06 0.0015 21.1 6.5 1 23 264 286 264 286 0.98

10 19 0.036 8.6 9.3 5.0 1 23 361 384 361 384 0.93

11 19 0.0027 0.63 12.9 2.7 1 23 388 410 388 410 0.93

12 19 0.54 1.3e+02 5.6 0.8 2 23 417 438 417 438 0.96

13 19 0.0021 0.5 13.2 0.3 1 23 444 466 444 466 0.95

14 19 0.00013 0.031 17.0 4.7 1 23 472 494 472 494 0.99

15 19 0.002 0.48 13.2 1.4 1 23 505 527 505 527 0.98

16 19 0.00019 0.046 16.4 1.2 1 23 534 556 534 556 0.97

17 19 9.7e-07 0.00023 23.7 0.3 2 23 563 584 563 584 0.97

18 19 6.3e-08 1.5e-05 27.4 1.5 1 23 590 612 590 612 0.98

19 19 1.1e-05 0.0026 20.4 2.6 1 23 618 640 618 640 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	6e-05	0.014	18.1	1.2	2	23	45	67	44	67	0.94
2	19	0.00054	0.13	15.0	7.5	3	23	71	91	70	91	0.98
3	19	0.026	6.2	9.8	0.6	2	23	98	119	97	119	0.96
4	19	0.025	6	9.8	0.3	1	23	125	147	125	147	0.97
5	19	6.2e-07	0.00015	24.3	3.1	1	23	153	175	153	175	0.99
6	19	2.4e-06	0.00058	22.4	0.3	1	23	180	202	180	202	0.99
7	19	5.9e-05	0.014	18.1	4.4	1	23	208	230	208	230	0.97
8	19	7e-06	0.0017	21.0	4.4	1	23	236	258	236	258	0.97
9	19	6.2e-06	0.0015	21.1	6.5	1	23	264	286	264	286	0.98
10	19	0.036	8.6	9.3	5.0	1	23	361	384	361	384	0.93
11	19	0.0027	0.63	12.9	2.7	1	23	388	410	388	410	0.93
12	19	0.54	1.3e+02	5.6	0.8	2	23	417	438	417	438	0.96
13	19	0.0021	0.5	13.2	0.3	1	23	444	466	444	466	0.95
14	19	0.00013	0.031	17.0	4.7	1	23	472	494	472	494	0.99
15	19	0.002	0.48	13.2	1.4	1	23	505	527	505	527	0.98
16	19	0.00019	0.046	16.4	1.2	1	23	534	556	534	556	0.97
17	19	9.7e-07	0.00023	23.7	0.3	2	23	563	584	563	584	0.97
18	19	6.3e-08	1.5e-05	27.4	1.5	1	23	590	612	590	612	0.98
19	19	1.1e-05	0.0026	20.4	2.6	1	23	618	640	618	640	0.99

Sequence Information

Coding Sequence: ATGAAGCAGAACTCTAAATCTGCTAAGGTGCCCAAAGGGGACATTAAATCTCTTTCTGGAAGTTTGGCGGTAGAGTTTGGACATTGCGATAAGAATGAGAAACAGTCGTCACCTGGTGGTGATAAAATATCGACATGTTCTATGTGCAAAGAAAGATTCACACGCCCAAGACAGCTGCAGCTGCACATGGGTAAGATGCATAAAAATGCCTGCGAAGTGTGTCACAAAGTGTTTAGTCGGAAACATCAGCTCCACTACCATAGGAAGTCACATTTTGAAAACAAGAGTTTGATTTGTGATATTTGTGGCTACGCGACTTATCTAAAGCGTTTCTTCGAGTCTCATAGGAGAAGACATTTTGGCGAGTACGCATTCAAATGCGACCAGTGTACCTCCGGGTTCTTCTCGAATGCGGAACTCTTAGAACACAAGGCGGTCCACACCGGCGTGCGGCCATACCAGTGCGAGTTATGCGGCAAGACCTTCAGTAAGCGCCGTTATCTCTCGACCCACATGCGTTACCATGATAGTAACACATACGTGTGCGACATCTGCGGAAAGTCCATCACTCAGAAGAACTATCTAATAATCCACCTGCGAAGACACATGGGAGACAAACGGCACATATGTGACTTCTGCGGAAAGGCGTTCTGCTCGTCAAACTACCTCAGACTCCACCGTCGCGTTCATACGGGGGAGAAGCCTCACCATTGCTCTTACTGCGGCAAGGGCTTCGCCCAGCGCTCGGCGCTCAACGTTCACATCAGGCACCACACGGGAGAGAAGCCCCACAAGTGCGATACCTGCGGCAAGTGTTTCTCGCAGCGCTCAGCGCTCAATGTCCACGTGAGGCATCACACGGGGGAGAAGCCCTTTGTTTGTGCCCTGTGCAGCCAGAGGTTCATAGCCTTTCTAGACGATTATACACGCCTCGGTAGAAATAATAGCATCACAAAGGAAGAGAAGCTAAAAGGGAAAGTGAAAGTGATTAAACTTGCCTCCGAATCAAACTTTGGCAAGAAGATTCCTTCAAAGCGAGTCGCCTTGGAAACTTTGAAGTCACGGAAGCAGGAGAGAACGTTCTCATGCACAGGCTGCAGTAAGAAGTTTGTACGGGAACACAAATTGCGCTGCCACATGGACAATGTGCACAACAAGGTTCATAAGTGTACGGTTTGCGGGCAGACGTTCGAGAAAGCGCACCAACTGAGCTATCACAGTGTGGTGCACAAAAAATCTAAAACGGAAGTATGTGACATTTGTGGCTATACCGCATATTACAGGTGTGTGATAGAGAATCATAAGAGGACACATTTCTGGGGAAACGAGTTCAGTTGCGACTTGTGCCAGAGAAGCTTTCAGGGTGCGTACGCCCTTATGAAACATAAAGTGGTTCACACCGACGTGAAGCAATACCAGTGCGACCTGTGCGGCCGACTATACGTTCACAAGTGTAACCTGACCGCGCACAGAAAGACCCACGTGTCGGGATACAAACGCCCCATGGATGGTCACCAGTGCGAGGTCTGCGGGAGAAAGTTCTTGGCGAAGAACTCGCTGGTGAAGCACGTGAGGTCTCACGTCGGCCAGAAACGTTGGTACAAGTGTGACGTATGTGGCAAGGACCTGTCGACGCGAGAGTCGCTCCAGGTCCACTGCAGGATCCACACCGGCGAGAAGCCGGAGGTCTGCAACTACTGCGGGAAGACGTTCAGTTCCCGCGTGGGGTTGAAGCTCCACGTTCGCGTTCATACCGGGGAGAAACCGTTCACTTGTAAGGAGTGCGGGAAGAGCTTCACTCAACAGTCGACTCTTATTGTCCACAAGAGACTCCATACGGGACAGCGTCCGTACGAGTGTCTGAAATGTGATAAGAGGTTCATAACCAAGACAATGATGAACAATCACATGAAGCGTCACACGTGA
Protein Sequence: MKQNSKSAKVPKGDIKSLSGSLAVEFGHCDKNEKQSSPGGDKISTCSMCKERFTRPRQLQLHMGKMHKNACEVCHKVFSRKHQLHYHRKSHFENKSLICDICGYATYLKRFFESHRRRHFGEYAFKCDQCTSGFFSNAELLEHKAVHTGVRPYQCELCGKTFSKRRYLSTHMRYHDSNTYVCDICGKSITQKNYLIIHLRRHMGDKRHICDFCGKAFCSSNYLRLHRRVHTGEKPHHCSYCGKGFAQRSALNVHIRHHTGEKPHKCDTCGKCFSQRSALNVHVRHHTGEKPFVCALCSQRFIAFLDDYTRLGRNNSITKEEKLKGKVKVIKLASESNFGKKIPSKRVALETLKSRKQERTFSCTGCSKKFVREHKLRCHMDNVHNKVHKCTVCGQTFEKAHQLSYHSVVHKKSKTEVCDICGYTAYYRCVIENHKRTHFWGNEFSCDLCQRSFQGAYALMKHKVVHTDVKQYQCDLCGRLYVHKCNLTAHRKTHVSGYKRPMDGHQCEVCGRKFLAKNSLVKHVRSHVGQKRWYKCDVCGKDLSTRESLQVHCRIHTGEKPEVCNYCGKTFSSRVGLKLHVRVHTGEKPFTCKECGKSFTQQSTLIVHKRLHTGQRPYECLKCDKRFITKTMMNNHMKRHT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01444991;
90% Identity: iTF_01444991;
80% Identity: -