Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000013.1:17667531-17670822[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.6e-05 0.0069 18.6 0.9 2 23 46 68 45 68 0.94

2 19 0.00046 0.09 15.0 7.5 3 23 72 92 71 92 0.98

3 19 0.022 4.3 9.8 0.6 2 23 99 120 98 120 0.96

4 19 0.04 7.8 9.0 0.3 1 23 126 148 126 148 0.96

5 19 5.4e-07 0.0001 24.3 3.1 1 23 154 176 154 176 0.99

6 19 2.1e-06 0.0004 22.4 0.3 1 23 181 203 181 203 0.99

7 19 5.1e-05 0.0099 18.1 4.4 1 23 209 231 209 231 0.97

8 19 4.8e-06 0.00092 21.3 4.2 1 23 237 259 237 259 0.96

9 19 7e-06 0.0014 20.8 6.4 1 23 265 287 265 287 0.97

10 19 0.031 6 9.3 5.0 1 23 360 383 360 383 0.93

11 19 0.0023 0.44 12.9 2.7 1 23 387 409 387 409 0.93

12 19 0.46 89 5.6 0.8 2 23 416 437 416 437 0.96

13 19 0.0018 0.35 13.2 0.3 1 23 443 465 443 465 0.95

14 19 0.00011 0.022 17.0 4.7 1 23 471 493 471 493 0.99

15 19 0.0017 0.34 13.2 1.4 1 23 504 526 504 526 0.98

16 19 0.00017 0.032 16.4 1.2 1 23 533 555 533 555 0.97

17 19 8.3e-07 0.00016 23.7 0.3 2 23 562 583 562 583 0.97

18 19 5.4e-08 1.1e-05 27.4 1.5 1 23 589 611 589 611 0.98

19 19 9.3e-06 0.0018 20.4 2.6 1 23 617 639 617 639 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.6e-05	0.0069	18.6	0.9	2	23	46	68	45	68	0.94
2	19	0.00046	0.09	15.0	7.5	3	23	72	92	71	92	0.98
3	19	0.022	4.3	9.8	0.6	2	23	99	120	98	120	0.96
4	19	0.04	7.8	9.0	0.3	1	23	126	148	126	148	0.96
5	19	5.4e-07	0.0001	24.3	3.1	1	23	154	176	154	176	0.99
6	19	2.1e-06	0.0004	22.4	0.3	1	23	181	203	181	203	0.99
7	19	5.1e-05	0.0099	18.1	4.4	1	23	209	231	209	231	0.97
8	19	4.8e-06	0.00092	21.3	4.2	1	23	237	259	237	259	0.96
9	19	7e-06	0.0014	20.8	6.4	1	23	265	287	265	287	0.97
10	19	0.031	6	9.3	5.0	1	23	360	383	360	383	0.93
11	19	0.0023	0.44	12.9	2.7	1	23	387	409	387	409	0.93
12	19	0.46	89	5.6	0.8	2	23	416	437	416	437	0.96
13	19	0.0018	0.35	13.2	0.3	1	23	443	465	443	465	0.95
14	19	0.00011	0.022	17.0	4.7	1	23	471	493	471	493	0.99
15	19	0.0017	0.34	13.2	1.4	1	23	504	526	504	526	0.98
16	19	0.00017	0.032	16.4	1.2	1	23	533	555	533	555	0.97
17	19	8.3e-07	0.00016	23.7	0.3	2	23	562	583	562	583	0.97
18	19	5.4e-08	1.1e-05	27.4	1.5	1	23	589	611	589	611	0.98
19	19	9.3e-06	0.0018	20.4	2.6	1	23	617	639	617	639	0.99

Sequence Information

Coding Sequence: ATGAAGCAGAACTCTAAATCTGCCAAGGTGCCCAAAGGGGACATTAAATCTCTTTCTGAAAGTTTAGCAGTAGAGTTTGGACATTGCAACAAGAATGAGAAACAGTCGTCACCTGGTGGTGGTGGTAAAATACTGACATGTTCCATGTGCAAAGAAAGGTTCACACGCCCAAGACAGCTGCAGCTGCACATGGGTAAGATGCATAAAAACGCATGCGAAGTGTGTCACAAAGTGTTTAGTCGGAAACATCAGCTCCACTACCATAGGAAGTCACATTTTAAAGACAAGAGTTTGATTTGTGACATTTGTGGATACGCGACTTATCTAAAGCGTTTCTTTGAGTCTCATAGGAGAAGACATTTTGGTGATTACACATTCAAATGTGACCAGTGTACCTCCGGGTTCTTCTCGAATGCGGAGCTTTTAGAACACAAGGTGGTCCACACCGGCATGCGGCCATACCAGTGCGAGTTGTGCGGCAAGACCTTCAGTAAGCGTCGTTATCTCTCGACCCACATGCGTTACCATGATAGTAACATATACGTGTGCGACATTTGCGGAAAGTCCATCACTCAGAAGAACTATCTAATAATCCACCTACGAAGACACATGGGAGACAAACGGCACATCTGTGACTTCTGCGGAAAGGCGTTCTGCTCGTCAAACTACCTCAGACTCCACCGCCGCGTTCATACGGGGGAGAAACCCCACAACTGCTCTCACTGTGGCAAGGGCTTCGCTCAGCGCTCGGCGCTCAACGTTCACATCAGGCACCACACAGGAGAGAAACCCCACAGGTGTGATACCTGCGGCAAGTGTTTCTCACAGCGCTCGGCGCTCAATGTCCACGTGAGGCATCACACCGGAGAGAAACCCTTTGTTTGTGCTCTGTGCAGCCAGAGAGCCTTTCTAGACGATTATACACGCCTCGGTAGAAATAATAGCACCACAAAGGAAGAGAGACTAAAAGGGTCAGTAAAAGTGATAAATCTCGCCTCCGAATCAAACTTTGGCAAGAAGATTCCTTCAAAGCGAGTTGCCTCGGAAACTGTCAAGTCTCGGAAGCAGGAAAGAACGTTCTCGTGCACGGGCTGCAGTAAGAAGTTTGTACGGGAACACAAATTGCGCTGCCACATGGACAATGTGCACAACAAGGTTCACAAGTGTACGGTTTGCGGGCAGACGTTCGAGAAAGCGCACCAACTTAGCTATCACAGTGTGGTGcacaaaaaatctaaaacagaAGTATGTGACATTTGTGGTTATACCGCGTATTACAGGTGTGTGATAGAGAATCATAAGAGGACACATTTCTGGGGGAATGAGTTCAGTTGCGACTTGTGCCAGAGAAGCTTTCAGGGTGCATATGCCCTTATGAAACATAAAGTGGTTCACACCGATGTGAAGCAATACCAGTGCGACTTGTGCGGCCGACTATACGTTCACAAGTGTAATCTGACCGCACATAGGAAGACCCACATCTCGGGATACAAACGCCCCACAGATGGTCACCAGTGCGAGGTCTGCGGGAGAAAGTTCTTGGCGAAGAACTCGCTGGTGAAGCACGTGAGGTCTCATGTCGGCCAGAAACGTTGGTACAAGTGCGACGTATGTGGCAAGGACCTGTCGACGCGAGAGTCACTCCAGGTCCACTGCAGAATCCACACCGGCGAGAAGCCGGAGGTTTGCAACTACTGCGGGAAGACGTTCAGTTCCCGCGTGGGGTTGAAGCTTCACGTTCGCGTTCATACCGGGGAGAAACCGTTCACTTGCAAGGAGTGCGGGAAGAGCTTCACTCAACAGTCGACACTTATCGTCCACAAGAGGCTCCATACAGGACAGCGTCCATACGAGTGTCTGAAATGTGATAAGAGGTTCATAACCAAGACAATGATGAACAATCACATGAAGCGTCACGTGTGA
Protein Sequence: MKQNSKSAKVPKGDIKSLSESLAVEFGHCNKNEKQSSPGGGGKILTCSMCKERFTRPRQLQLHMGKMHKNACEVCHKVFSRKHQLHYHRKSHFKDKSLICDICGYATYLKRFFESHRRRHFGDYTFKCDQCTSGFFSNAELLEHKVVHTGMRPYQCELCGKTFSKRRYLSTHMRYHDSNIYVCDICGKSITQKNYLIIHLRRHMGDKRHICDFCGKAFCSSNYLRLHRRVHTGEKPHNCSHCGKGFAQRSALNVHIRHHTGEKPHRCDTCGKCFSQRSALNVHVRHHTGEKPFVCALCSQRAFLDDYTRLGRNNSTTKEERLKGSVKVINLASESNFGKKIPSKRVASETVKSRKQERTFSCTGCSKKFVREHKLRCHMDNVHNKVHKCTVCGQTFEKAHQLSYHSVVHKKSKTEVCDICGYTAYYRCVIENHKRTHFWGNEFSCDLCQRSFQGAYALMKHKVVHTDVKQYQCDLCGRLYVHKCNLTAHRKTHISGYKRPTDGHQCEVCGRKFLAKNSLVKHVRSHVGQKRWYKCDVCGKDLSTRESLQVHCRIHTGEKPEVCNYCGKTFSSRVGLKLHVRVHTGEKPFTCKECGKSFTQQSTLIVHKRLHTGQRPYECLKCDKRFITKTMMNNHMKRHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01444991;
90% Identity: iTF_01444991;
80% Identity: -