Tcom015542.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- retn
- Assembly
- GCA_958496195.1
- Location
- OY292369.1:6799222-6806875[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-19 4e-16 59.8 0.0 16 89 8 79 3 79 0.94 2 2 4.2 1.1e+04 -2.5 0.0 25 38 210 223 172 226 0.61
Sequence Information
- Coding Sequence
- ATGACCAATAGGAATCTGGCTAGATGTACTCCAATAAACCGACTGCCGATAATGGCTAAGTCTGTGCTCGATCTCTACGAGCTGTATAACCTGGTGATCGCTCGCGGAGGACTCGTCGAAGTCATCAACAAAAAGCTTTGGCAGGAGATCATCAAGGGTCTCCGGCTACCTTCCTCCATCACGTCAGCGGCTTTCACTTTACGTACACAATACATGAAATACCTATACGACTATGAATGTGAGAAGAAGAACCTGTCGACGCGCAGTGAGCTGGACGCGGCCATTGAAGGGAACAAACGGGAAGGGAGACGGGCTTCGGGACAGTATGACGCACAGGCTGCTCTAGCAATGCCCCCCCTAAACCGAGTGCCAGCCTCCCTAGCCCAGTTGTCCCAACACATGCAGCCTCTCTCGCTCTCTCTCGCCGGCGGAGTTGGCGGGGTCCCACGACTGCCTCCGCTACCGCCCCACGCGCCCCACATCTCACAACACGACATAGAATACAGAGTCAGAGAATACATGAAGATGATACAGCAGCAACGTGAATTGATGAGGAATGGTTCAGAATCACCTCCCAGCGGTAACGGTCCGACGCCGATGATGTCGCCCCGGGACGCCGCGCTCAGTGCCATAGACGTGTCACGGCTCACACTCTGGTCTCTATACaataacaacaacaacaacagccCACAACCAGACCTGGAACCGCAACGCGAGGCGTTGAACCTGAGCGAGAGCCCTAACTCGAGCACGAGTGGCGGCAAGCGTGAAGCGTGCCggtcgccgccgccgcccgccaaGCGCCGCACGCCGCGGCCCCCCTCGCCGCGCCTGCCCTccccgccgcgcgcgcccgcccCCCCGCACCACCTCAACGGGTCGCCCCCCAACGGAGTCAACGGAGCTGCCTTCAAAATCACTACCAGAGGTGACGCGACGACAGGCGACCAGCAGCTCGTCGTATCAATAGAACTGAACGGTGTGACATACGAAGGAGTCCTTTTCCCCTCACAAAACGGCAGCGGCCAAAACGGTCACAGGCAAATGGTCTCCTAA
- Protein Sequence
- MTNRNLARCTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLAGGVGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPSGNGPTPMMSPRDAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSSTSGGKREACRSPPPPAKRRTPRPPSPRLPSPPRAPAPPHHLNGSPPNGVNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSQNGSGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00638435;
- 80% Identity
- -