Pmet000831.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- CAJHWW010000005.1:2367230-2367784[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-14 8.1e-12 45.4 0.0 1 41 15 55 15 57 0.96
Sequence Information
- Coding Sequence
- ATGCCAAGTACGTACAAACGGACGTCGCAGCAACAGACATGGGATCCGGATGCGATGGAAAATGCTATAAGAGCTGTGCGAAACGAAGAAATGGGCTTCCTCAAGGCTAGCAAAGAATTCAAAGTTCCTCGATCGACGCTCAAAAGACGTGTAAAAGGAATAAACAAAGAAGCTATTGAAAATAAAAAAATATTGGGGTCTTGCCGCCCAACTTTTAGTATGGAGCAAGAAGGAGAATTGGTGCATCACATTTTAGAAATGGAAAAGCGATTTTACGGATTAACTTTACAGGATGTACGGAGACTGGCCTATCAGTTGGCTGAACGCAATAATATAGAACACAAGTTTAATAAAGATACTCAAATGGCTGGAAAAGCATGGATTTCTGCTTTTAGAAAACGTCACCCGGAACTGACATTAAGAAGCCCAGAAGCAACCTCTCTTGCTCGAGCACAGGGCTTTAATAAAGTAAGTGTCATGAAATTTTTTGACCTACTGGAAGAGGTAAGGTCTAAAACAAACTACCCACCTCATCGTATTTTTAATGTGGACTAG
- Protein Sequence
- MPSTYKRTSQQQTWDPDAMENAIRAVRNEEMGFLKASKEFKVPRSTLKRRVKGINKEAIENKKILGSCRPTFSMEQEGELVHHILEMEKRFYGLTLQDVRRLAYQLAERNNIEHKFNKDTQMAGKAWISAFRKRHPELTLRSPEATSLARAQGFNKVSVMKFFDLLEEVRSKTNYPPHRIFNVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087945;
- 90% Identity
- iTF_01192550; iTF_00123277; iTF_00123278; iTF_00123279; iTF_00635313; iTF_01029142; iTF_01230454; iTF_00001858; iTF_00001953; iTF_00002119; iTF_00001878; iTF_00037702; iTF_00037707; iTF_01440912; iTF_00895827;
- 80% Identity
- -