Tlin010997.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963932265.1
- Location
- OZ010686.1:17786934-17791341[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-77 1.6e-72 245.3 23.5 1 291 7 291 7 295 0.86 2 2 1 3.5e+04 -5.9 18.5 1 44 296 339 296 369 0.70
Sequence Information
- Coding Sequence
- ATGGTGTCCGGTTTCCAGGCGGAGCAGCGgctggcggcgcggcgcgcggcgcgggcggAGGCACGTGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCCTATGACATGTACACCGAGACGGTGGGCCGCGGCGGGCGGACGCGGCTGGCGGCCATGAGCCCCGCGGGGCTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGCCGATGATATCATCAGTATGAAGGACCTTAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCGCGCACGCCTACCAGCtggagctgctcaaggaccggaTAGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGCGAGCACAAGGAGAAGTGTTCGTCGCACGAGCGTCTGAAGCGCGAGCACGCGGCGCTGGAGCGCGAGCTGGCGGGCGCGCGGGACGCGGTGCGCGCGCGggacgccgccgccgccgccgccggccGCGCCTTCGTGGAGGCCGCGTCGCTGCCCGCGGGGGACGGGGGGGAGGTGGCGGAGGGTGTCGGCCAGGGCTTCGGCTCCGTGCCGCCGCTCGCGCTCGTCTCGCACTCCTCCGAGCAGCTGCTCAATGATGCCGGAGAGGGGACGCTGGACGTCCGGTTGCAGAAGCTGGTGAGCTCGAAGCAGGAGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCGGCTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTCGCCGCGCACCACGACCGCGACCACGAGACTGAGCTGGAGACGCTCCGCAAGCAAGTGTCGGAGGCGAAGGGCAGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGGCGGCGGCGGGTGCGGCGCGGCTGGAGGCGCAGCTGGCGCGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCGCGAGGAGCAGCTCAAGGTGGAGCGCCGCCGGCTGCAGCGGGAGGCTCGGGAGGCGCTGAACCGAGTGGAGGAGTTGGAGACGGAGAACAGCCACCTGACGAAGCGGCTCGACAAGCTGAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MVSGFQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTETVGRGGRTRLAAMSPAGLHSPRRSSEDSADDIISMKDLRHELKEVEEKFRKAMILNAQLDNDKAAHAYQLELLKDRIEELHEEYAQLQREHKEKCSSHERLKREHAALERELAGARDAVRARDAAAAAAGRAFVEAASLPAGDGGEVAEGVGQGFGSVPPLALVSHSSEQLLNDAGEGTLDVRLQKLVSSKQELESEVRKLKLRLNEERAARQNGVAAHHDRDHETELETLRKQVSEAKGRAARAEAEAALAAAGAARLEAQLARLRARQDHQDEREEQLKVERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651756;
- 90% Identity
- -
- 80% Identity
- -