Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:3624387-3628365[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 21 5.0 0.0 21 45 178 202 156 210 0.90

2 10 0.63 1.1e+02 2.6 0.1 21 46 408 433 404 440 0.85

3 10 0.13 23 4.9 0.1 22 46 506 530 501 533 0.85

4 10 0.039 7.2 6.5 0.0 21 51 533 563 529 564 0.87

5 10 0.0064 1.2 9.0 0.1 21 46 561 586 558 592 0.87

6 10 0.23 41 4.1 0.1 21 49 589 617 585 622 0.90

7 10 0.36 66 3.4 0.0 23 48 654 679 647 682 0.86

8 10 0.0019 0.35 10.7 0.0 22 45 682 705 680 709 0.90

9 10 0.13 24 4.8 0.0 21 44 737 760 731 768 0.88

10 10 0.16 29 4.5 0.0 22 45 766 789 760 792 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	21	5.0	0.0	21	45	178	202	156	210	0.90
2	10	0.63	1.1e+02	2.6	0.1	21	46	408	433	404	440	0.85
3	10	0.13	23	4.9	0.1	22	46	506	530	501	533	0.85
4	10	0.039	7.2	6.5	0.0	21	51	533	563	529	564	0.87
5	10	0.0064	1.2	9.0	0.1	21	46	561	586	558	592	0.87
6	10	0.23	41	4.1	0.1	21	49	589	617	585	622	0.90
7	10	0.36	66	3.4	0.0	23	48	654	679	647	682	0.86
8	10	0.0019	0.35	10.7	0.0	22	45	682	705	680	709	0.90
9	10	0.13	24	4.8	0.0	21	44	737	760	731	768	0.88
10	10	0.16	29	4.5	0.0	22	45	766	789	760	792	0.89

Sequence Information

Coding Sequence: ATGCTCAGCAACGCTGGGGGTACCCGGAGGTCCCCAAGAGGAGGGCCTGGTGCCTTAACGGAGAAGTTGAAGAAGCAGCTTGTTGATGAGAGCCTCTCCGACCCTGACGATCCTGGCAGTGATTGTGTTGTTGCTCCTCTTGTGTCTGTCCCATCAAACGGCTTGAATGAAGGCAGAAAAGACATGTCAATGGaagaaaaatgtacaaaatttttACGCCTCTGTGCCAGGGCGCGTAATTTGGTTTCTCAAAGTAGAGGGCAGCTGTTTCTTGAAAGGATGGAGGATATAATATCTAGCATGGAAAAATATCGAGAAGTTGTTGTCATTTCAAACACCTTAGGTGAAAAACATGTCCCCAATGACACTCGTCAACAAAAAGTCTCCCGATGCCTTAAAGCCCCCCTTATTTGGAATAACAGCAACCAAAAGAAAAATACTTATACGGAAAGAAGGATATTTCCCTGCTCCATCTGCAATAAGACGTTAACTACACCACTAGGATTGAGATTACACTTCAGAATCCATACAGGTGAAAAACCTTTCGAGTGCCAAGTTTGCTGGAAGAAGTTTGAACAATCAAGTTCTCTTGGAGTTCATTTGAGGACACATGCTGGAGAAAAGGCAGGGGAGAACACTCTGGAAGGAGAGAGATTGGTTGGTAACTACATCGACAGAAGGATACAAAACACTTCAGCTCCTCCTATTCAGGCTGACACTATACGCAATGATGATAACTTCAATAGTCAAGAGAACTCTATTACATTGGCACAAAGTGATGATGATTCATGTCTGCTCTCGTCCCATACCCAGGATGAAACCAACCATGACAATACCGACCAGGATGAAACCAACCATAACGATACCGACCAGAATGAAACCAACCAGGATGAAACCAAACAAGATGAAATTGGCCAGGATGAAATCAACCAGTCTAATAATGATGATAATAGTGATAATAATGACAATTTTAAGGAAGTTGAAAGTGAGAACTCTATTAATTCGGCTTCAAGTGATGATGATTCATATTCACCTTCTCTTGGTCACAAGTCTTTGGATTCTGAGTGCTCTTCAGATGAATCTAACGATATAAGTGATGACAATACAAGATTCAAACCAAAGAAGATTATCCACGAAGGAAGAACAATGTTCCCCTGCACCATGTGTAGTAAGATGTTAACTACAGCACTCGGCTTTAGATTACACTTAAGAACCCATACAGGGGAAAAGCCGTATAATTGCCATGTTTGCAATAAGAAGTTTGCACAACCAAGTGCTCTTAGAGGTCATATAAGAACACATACTGGAGAAAAACCATATGAATGTGCCATTTGTGGTAAGAAGTATGATAAGAAGATCTATCTAAGCTTTCATCTCCGGCTCCATTCTTCGGGAGCACTAACCTGTGAGGAGGAAAATGCTCCCGAAGAAGAGAGGACATTTTTGTGTCACATCTGTAGCAAGATGTTTACTACGCAAAAATCCCTCAGCTCACACCTACAAACTCACTCAGGAGAAAAGTCTTACCTGTGCCATTTTTGTGATAAGTCTTTCTCGCAGAGTAGTAATCTCAGAAGTCATATAAGAATCCATACTGATGAAAGACCGTTTGAATGCACCATTTGTGGCAAGAAGTTTAGGGAGAAAAGGGGTCTTAATCTACATCTTCAATTCCATCGGGGTGAAAAGCCATTGGAGTGCCATATTTGTTCTAAGAGGTTTAGAGGAAAAGCGAATCTTCGAAAACATATAAGAACCCATACTGGTGAAAAGCCTTTTACGTGCTCACATTGTGATCAGAAGTTTACTCAGAAACATGCTCTGGACGCTCATGTTGCAAATCGTCATACTGGAGAAaagccctttgagtgcacTCAATGTGATAAAAAGTACAGTCAAAGGAGTCTACTGAATGCTCATGTTAATGCAGTCCATTTAGGTAAAAAACCAAAAAGCTTGCGTGCCCATGTGTGCCCACTTTGCAATAAAACTTTGTCCAGCGGATATCTTCTCAAGCAACATGTTGAAGTTACCCACACTGGAGATAGGCCTTTCGAGTGCCCAATTTGTCAAAAGAAGATAAGTAGCTCTTCTAATCTCAAGACTCATATTAAAACTCACTCTGGGGAGAGGTGTTTTGAATGCACTGTTTGTCACAAGAGGTACAGCACTAAAGCTAATCTTGGAACTCATTTTAGAACTCATACAGGAGAAAGGCCCtttgagtgcacagtttgcaacaagaagttcaaaCAATCATATGAACTTAAAGAGCATAGCAGAATTCACACTGGAGATAGACCTTTTGGGTGCACAGTTTGTGAAAAGAAATTCACCCAAGCAGGCACTCTTAGAAAACATCTTCAAACTCATAAACCACGGTAG
Protein Sequence: MLSNAGGTRRSPRGGPGALTEKLKKQLVDESLSDPDDPGSDCVVAPLVSVPSNGLNEGRKDMSMEEKCTKFLRLCARARNLVSQSRGQLFLERMEDIISSMEKYREVVVISNTLGEKHVPNDTRQQKVSRCLKAPLIWNNSNQKKNTYTERRIFPCSICNKTLTTPLGLRLHFRIHTGEKPFECQVCWKKFEQSSSLGVHLRTHAGEKAGENTLEGERLVGNYIDRRIQNTSAPPIQADTIRNDDNFNSQENSITLAQSDDDSCLLSSHTQDETNHDNTDQDETNHNDTDQNETNQDETKQDEIGQDEINQSNNDDNSDNNDNFKEVESENSINSASSDDDSYSPSLGHKSLDSECSSDESNDISDDNTRFKPKKIIHEGRTMFPCTMCSKMLTTALGFRLHLRTHTGEKPYNCHVCNKKFAQPSALRGHIRTHTGEKPYECAICGKKYDKKIYLSFHLRLHSSGALTCEEENAPEEERTFLCHICSKMFTTQKSLSSHLQTHSGEKSYLCHFCDKSFSQSSNLRSHIRIHTDERPFECTICGKKFREKRGLNLHLQFHRGEKPLECHICSKRFRGKANLRKHIRTHTGEKPFTCSHCDQKFTQKHALDAHVANRHTGEKPFECTQCDKKYSQRSLLNAHVNAVHLGKKPKSLRAHVCPLCNKTLSSGYLLKQHVEVTHTGDRPFECPICQKKISSSSNLKTHIKTHSGERCFECTVCHKRYSTKANLGTHFRTHTGERPFECTVCNKKFKQSYELKEHSRIHTGDRPFGCTVCEKKFTQAGTLRKHLQTHKPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435225;
90% Identity: iTF_01435225;
80% Identity: iTF_01435225;