Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:3624387-3628365[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00041 0.013 15.6 0.3 1 23 154 176 154 176 0.98

2 16 6.9e-06 0.00022 21.2 0.4 1 23 182 204 182 204 0.98

3 16 0.0017 0.055 13.6 0.6 1 23 384 406 384 406 0.98

4 16 3.9e-07 1.2e-05 25.1 1.2 1 23 412 434 412 434 0.98

5 16 0.0096 0.31 11.3 0.8 1 23 440 462 440 462 0.97

6 16 2.3e-05 0.00072 19.5 3.9 1 23 481 503 481 503 0.96

7 16 1.3e-07 4e-06 26.6 3.3 1 23 509 531 509 531 0.96

8 16 2.4e-05 0.00077 19.5 1.2 1 23 537 559 537 559 0.97

9 16 5.6e-07 1.8e-05 24.6 2.8 2 23 566 587 565 587 0.97

10 16 0.00041 0.013 15.6 3.2 1 23 593 616 593 616 0.93

11 16 8.9e-06 0.00028 20.8 0.4 1 23 622 645 622 645 0.94

12 16 0.0021 0.068 13.3 0.5 1 23 656 679 656 679 0.94

13 16 5.8e-07 1.8e-05 24.6 0.8 1 23 685 707 685 707 0.98

14 16 3.8e-05 0.0012 18.8 3.7 1 23 713 735 713 735 0.98

15 16 3.6e-06 0.00012 22.1 2.0 1 23 741 763 741 763 0.98

16 16 8.5e-06 0.00027 20.9 0.9 3 23 771 791 769 791 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00041	0.013	15.6	0.3	1	23	154	176	154	176	0.98
2	16	6.9e-06	0.00022	21.2	0.4	1	23	182	204	182	204	0.98
3	16	0.0017	0.055	13.6	0.6	1	23	384	406	384	406	0.98
4	16	3.9e-07	1.2e-05	25.1	1.2	1	23	412	434	412	434	0.98
5	16	0.0096	0.31	11.3	0.8	1	23	440	462	440	462	0.97
6	16	2.3e-05	0.00072	19.5	3.9	1	23	481	503	481	503	0.96
7	16	1.3e-07	4e-06	26.6	3.3	1	23	509	531	509	531	0.96
8	16	2.4e-05	0.00077	19.5	1.2	1	23	537	559	537	559	0.97
9	16	5.6e-07	1.8e-05	24.6	2.8	2	23	566	587	565	587	0.97
10	16	0.00041	0.013	15.6	3.2	1	23	593	616	593	616	0.93
11	16	8.9e-06	0.00028	20.8	0.4	1	23	622	645	622	645	0.94
12	16	0.0021	0.068	13.3	0.5	1	23	656	679	656	679	0.94
13	16	5.8e-07	1.8e-05	24.6	0.8	1	23	685	707	685	707	0.98
14	16	3.8e-05	0.0012	18.8	3.7	1	23	713	735	713	735	0.98
15	16	3.6e-06	0.00012	22.1	2.0	1	23	741	763	741	763	0.98
16	16	8.5e-06	0.00027	20.9	0.9	3	23	771	791	769	791	0.98

Sequence Information

Coding Sequence: ATGCTCAGCAACGCTGGGGGTACCCGGAGGTCCCCAAGAGGAGGGCCTGGTGCCTTAACGGAGAAGTTGAAGAAGCAGCTTGTTGATGAGAGCCTCTCCGACCCTGACGATCCTGGCAGTGATTGTGTTGTTGCTCCTCTTGTGTCTGTCCCATCAAACGGCTTGAATGAAGGCAGAAAAGACATGTCAATGGaagaaaaatgtacaaaatttttACGCCTCTGTGCCAGGGCGCGTAATTTGGTTTCTCAAAGTAGAGGGCAGCTGTTTCTTGAAAGGATGGAGGATATAATATCTAGCATGGAAAAATATCGAGAAGTTGTTGTCATTTCAAACACCTTAGGTGAAAAACATGTCCCCAATGACACTCGTCAACAAAAAGTCTCCCGATGCCTTAAAGCCCCCCTTATTTGGAATAACAGCAACCAAAAGAAAAATACTTATACGGAAAGAAGGATATTTCCCTGCTCCATCTGCAATAAGACGTTAACTACACCACTAGGATTGAGATTACACTTCAGAATCCATACAGGTGAAAAACCTTTCGAGTGCCAAGTTTGCTGGAAGAAGTTTGAACAATCAAGTTCTCTTGGAGTTCATTTGAGGACACATGCTGGAGAAAAGGCAGGGGAGAACACTCTGGAAGGAGAGAGATTGGTTGGTAACTACATCGACAGAAGGATACAAAACACTTCAGCTCCTCCTATTCAGGCTGACACTATACGCAATGATGATAACTTCAATAGTCAAGAGAACTCTATTACATTGGCACAAAGTGATGATGATTCATGTCTGCTCTCGTCCCATACCCAGGATGAAACCAACCATGACAATACCGACCAGGATGAAACCAACCATAACGATACCGACCAGAATGAAACCAACCAGGATGAAACCAAACAAGATGAAATTGGCCAGGATGAAATCAACCAGTCTAATAATGATGATAATAGTGATAATAATGACAATTTTAAGGAAGTTGAAAGTGAGAACTCTATTAATTCGGCTTCAAGTGATGATGATTCATATTCACCTTCTCTTGGTCACAAGTCTTTGGATTCTGAGTGCTCTTCAGATGAATCTAACGATATAAGTGATGACAATACAAGATTCAAACCAAAGAAGATTATCCACGAAGGAAGAACAATGTTCCCCTGCACCATGTGTAGTAAGATGTTAACTACAGCACTCGGCTTTAGATTACACTTAAGAACCCATACAGGGGAAAAGCCGTATAATTGCCATGTTTGCAATAAGAAGTTTGCACAACCAAGTGCTCTTAGAGGTCATATAAGAACACATACTGGAGAAAAACCATATGAATGTGCCATTTGTGGTAAGAAGTATGATAAGAAGATCTATCTAAGCTTTCATCTCCGGCTCCATTCTTCGGGAGCACTAACCTGTGAGGAGGAAAATGCTCCCGAAGAAGAGAGGACATTTTTGTGTCACATCTGTAGCAAGATGTTTACTACGCAAAAATCCCTCAGCTCACACCTACAAACTCACTCAGGAGAAAAGTCTTACCTGTGCCATTTTTGTGATAAGTCTTTCTCGCAGAGTAGTAATCTCAGAAGTCATATAAGAATCCATACTGATGAAAGACCGTTTGAATGCACCATTTGTGGCAAGAAGTTTAGGGAGAAAAGGGGTCTTAATCTACATCTTCAATTCCATCGGGGTGAAAAGCCATTGGAGTGCCATATTTGTTCTAAGAGGTTTAGAGGAAAAGCGAATCTTCGAAAACATATAAGAACCCATACTGGTGAAAAGCCTTTTACGTGCTCACATTGTGATCAGAAGTTTACTCAGAAACATGCTCTGGACGCTCATGTTGCAAATCGTCATACTGGAGAAaagccctttgagtgcacTCAATGTGATAAAAAGTACAGTCAAAGGAGTCTACTGAATGCTCATGTTAATGCAGTCCATTTAGGTAAAAAACCAAAAAGCTTGCGTGCCCATGTGTGCCCACTTTGCAATAAAACTTTGTCCAGCGGATATCTTCTCAAGCAACATGTTGAAGTTACCCACACTGGAGATAGGCCTTTCGAGTGCCCAATTTGTCAAAAGAAGATAAGTAGCTCTTCTAATCTCAAGACTCATATTAAAACTCACTCTGGGGAGAGGTGTTTTGAATGCACTGTTTGTCACAAGAGGTACAGCACTAAAGCTAATCTTGGAACTCATTTTAGAACTCATACAGGAGAAAGGCCCtttgagtgcacagtttgcaacaagaagttcaaaCAATCATATGAACTTAAAGAGCATAGCAGAATTCACACTGGAGATAGACCTTTTGGGTGCACAGTTTGTGAAAAGAAATTCACCCAAGCAGGCACTCTTAGAAAACATCTTCAAACTCATAAACCACGGTAG
Protein Sequence: MLSNAGGTRRSPRGGPGALTEKLKKQLVDESLSDPDDPGSDCVVAPLVSVPSNGLNEGRKDMSMEEKCTKFLRLCARARNLVSQSRGQLFLERMEDIISSMEKYREVVVISNTLGEKHVPNDTRQQKVSRCLKAPLIWNNSNQKKNTYTERRIFPCSICNKTLTTPLGLRLHFRIHTGEKPFECQVCWKKFEQSSSLGVHLRTHAGEKAGENTLEGERLVGNYIDRRIQNTSAPPIQADTIRNDDNFNSQENSITLAQSDDDSCLLSSHTQDETNHDNTDQDETNHNDTDQNETNQDETKQDEIGQDEINQSNNDDNSDNNDNFKEVESENSINSASSDDDSYSPSLGHKSLDSECSSDESNDISDDNTRFKPKKIIHEGRTMFPCTMCSKMLTTALGFRLHLRTHTGEKPYNCHVCNKKFAQPSALRGHIRTHTGEKPYECAICGKKYDKKIYLSFHLRLHSSGALTCEEENAPEEERTFLCHICSKMFTTQKSLSSHLQTHSGEKSYLCHFCDKSFSQSSNLRSHIRIHTDERPFECTICGKKFREKRGLNLHLQFHRGEKPLECHICSKRFRGKANLRKHIRTHTGEKPFTCSHCDQKFTQKHALDAHVANRHTGEKPFECTQCDKKYSQRSLLNAHVNAVHLGKKPKSLRAHVCPLCNKTLSSGYLLKQHVEVTHTGDRPFECPICQKKISSSSNLKTHIKTHSGERCFECTVCHKRYSTKANLGTHFRTHTGERPFECTVCNKKFKQSYELKEHSRIHTGDRPFGCTVCEKKFTQAGTLRKHLQTHKPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435694;
90% Identity: iTF_01435694;
80% Identity: iTF_01435694;