Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:3611065-3619290[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.99 1.8e+02 2.0 0.0 21 45 203 227 195 234 0.88

2 22 0.49 89 3.0 0.1 21 43 412 434 407 443 0.86

3 22 6.1 1.1e+03 -0.5 0.1 21 45 440 464 434 469 0.86

4 22 0.024 4.3 7.2 0.0 21 44 505 528 497 532 0.90

5 22 0.076 14 5.6 0.1 21 44 533 556 529 559 0.91

6 22 0.002 0.36 10.7 0.0 20 45 560 585 557 593 0.92

7 22 0.65 1.2e+02 2.6 0.0 21 53 618 651 612 652 0.89

8 22 0.014 2.5 7.9 0.3 20 46 657 683 648 688 0.85

9 22 0.49 89 3.0 0.1 22 45 687 710 685 718 0.85

10 22 3 5.5e+02 0.5 0.1 21 45 714 738 710 742 0.84

11 22 0.09 16 5.3 0.3 18 47 739 768 736 773 0.85

12 22 0.17 32 4.4 0.1 21 45 770 794 765 801 0.88

13 22 7.5 1.4e+03 -0.8 0.1 26 52 988 1014 972 1016 0.80

14 22 7.4 1.3e+03 -0.8 0.0 23 48 1013 1038 1007 1043 0.83

15 22 4.6 8.4e+02 -0.1 0.1 25 51 1239 1264 1221 1266 0.74

16 22 0.079 14 5.5 0.1 21 45 1262 1286 1254 1293 0.85

17 22 0.15 28 4.6 0.0 21 52 1290 1321 1285 1323 0.88

18 22 0.85 1.5e+02 2.2 0.0 21 48 1318 1345 1315 1350 0.86

19 22 2.4 4.4e+02 0.8 0.1 21 48 1346 1373 1338 1378 0.83

20 22 0.00044 0.081 12.7 0.2 12 48 1401 1437 1392 1440 0.90

21 22 0.69 1.3e+02 2.5 0.4 22 44 1496 1518 1487 1522 0.85

22 22 0.14 26 4.7 0.0 21 44 1523 1546 1515 1551 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.99	1.8e+02	2.0	0.0	21	45	203	227	195	234	0.88
2	22	0.49	89	3.0	0.1	21	43	412	434	407	443	0.86
3	22	6.1	1.1e+03	-0.5	0.1	21	45	440	464	434	469	0.86
4	22	0.024	4.3	7.2	0.0	21	44	505	528	497	532	0.90
5	22	0.076	14	5.6	0.1	21	44	533	556	529	559	0.91
6	22	0.002	0.36	10.7	0.0	20	45	560	585	557	593	0.92
7	22	0.65	1.2e+02	2.6	0.0	21	53	618	651	612	652	0.89
8	22	0.014	2.5	7.9	0.3	20	46	657	683	648	688	0.85
9	22	0.49	89	3.0	0.1	22	45	687	710	685	718	0.85
10	22	3	5.5e+02	0.5	0.1	21	45	714	738	710	742	0.84
11	22	0.09	16	5.3	0.3	18	47	739	768	736	773	0.85
12	22	0.17	32	4.4	0.1	21	45	770	794	765	801	0.88
13	22	7.5	1.4e+03	-0.8	0.1	26	52	988	1014	972	1016	0.80
14	22	7.4	1.3e+03	-0.8	0.0	23	48	1013	1038	1007	1043	0.83
15	22	4.6	8.4e+02	-0.1	0.1	25	51	1239	1264	1221	1266	0.74
16	22	0.079	14	5.5	0.1	21	45	1262	1286	1254	1293	0.85
17	22	0.15	28	4.6	0.0	21	52	1290	1321	1285	1323	0.88
18	22	0.85	1.5e+02	2.2	0.0	21	48	1318	1345	1315	1350	0.86
19	22	2.4	4.4e+02	0.8	0.1	21	48	1346	1373	1338	1378	0.83
20	22	0.00044	0.081	12.7	0.2	12	48	1401	1437	1392	1440	0.90
21	22	0.69	1.3e+02	2.5	0.4	22	44	1496	1518	1487	1522	0.85
22	22	0.14	26	4.7	0.0	21	44	1523	1546	1515	1551	0.88

Sequence Information

Coding Sequence: ATGAAGTTGCCAAATCCCCTATCAGTTTCACCCTCGTCCTCCTCTCCTGCTTCTCTCGCTATGCTCACCAACGCCCCAGGAACCTGGAGGTCTGCGACAGGAAGCCTTAGGGTTTCATCGGAGAAGTCGAAAAGGCATTTCGTTGACGAAAGCCAATCAGACCCTGATGATCCTGATAGTGACTGTGATgttgctcctcctcctctcgtCCCCTCAAACCTGACTCAAGGGAATAAAAGTGGGCAAAAAATGACAAGGGAAGAAAAATGTGAAGAATTTTTGTGCCTGTATGCAAGGGCTAGGAATTTGGTTTCGCAATGTGTTGGCGAACAGCTTCTCAAAAGGTGCAAGATAATGACAGAAATTATATCTAGTTGGGAAAAGAATATAGAAGTTGAAGTCGTCCAGAACACTTCAGGTGGAAAACATGTCCCTAATGGCACCCAAAAAAAGAGAGCCCCTCTTTGCCTTGATGCACCCAACATCCAGGATAAAAGCAACCAAAAGAAAAATACTATCCAAGAACGAAGGATGTTTTCTTGCACCATGTGCAGTAAGATGTTAACTACGCCACTAGCACTTAAATTACACTTAAGAATCCATACAGGGGAAAAGCCTTTTGAGTGCCAAGTTTGCAATAAGAAGTTTGAACAGTCAAGCTCTCTGGGAGTTCATTTGAGAACACATGATGAAAAGGCAGGGGAGAACACTCTGAAAGCAGAGAGGTCGGTTATGTGCCACATTGATAGCAGGATAACAAATACTTCAGGTGATGGAGATATCTCCTCTGACATCGAGGAAATTTCCCTTTCTGTTGTTGATGCTCCTCACATCGTGGTCGATACTGAACAAGAGAATGGTGACATCAATTGTCAAGAAAACTCTAGAACTTTGTCACAAAGTGAAGATGTTTCACATTTGCCCTCACCGCACATCCAGGATGAAACCAGCCAGGATGATGATAATAATGACAATTTTAAGGAAGTTGAAAGTCCTGAGAATTCTATTGATGTGGCTGCAAGTGATGATGATGGTTCATATTCACCTTCTGTTGGTGACAAGTCCTCGGATTCTGAGAGCTCTTCAGATGAATCTAATAATGTGCGTAATAAGAATATTCAACCCAAACCGGACAAGATTATCCACGAAGGAAAAACTATGTTCCCTTGCACCATGTGTTCTAAGATGTTGACTACCGCACTCGGATTTAGATTACACTTAAGAACCCATACAGGGGAAAAGCCTTATGAGTGCCATGTTTGCAATAAGAAGTATCGACAATCAAGTGCTCTTGCAGTTCATAAAAGAACACATACTGGAGAAAAGCCTTATGAATGTGCTGTTTGCGGTAAGAAGTATAATAGAAAGATCCATCTAAGAAATCATCTTCAAGGCCATGAACAGCCCAGTGAGGGTAATGCTCCCAAAGAAAAAAGGACATTTTTGTGCCACATCTGCAGCAAGATGTTTACTGCACAAAAATCACTCAGCTCACACCTACGAACTCATACGGGAGAAAAACCCTACATGTGCCATTTTTGTGATAAAACTTTCTCGCAGAGTGGTAACCTTAGAACTCACATAAGAACCCACACTGGAGAAAAGCCTTCGAAATGCACTATTTGTGACAAGAAGTTTAATAGAAGTAGTGCTCTGAGGTATCATCTTCTCTCCCACCAGGGGGAAAAGCCAGAGGAGTGTACTATTTGTTCCATGAAGTTCAGAGGCAAAGCCAATCTCAAAAGACACATTAGAACCCATACTGGTGAGAAACTCTATACGTGCACATTTTGCGAGAAGAAGTTTGCCAGAAAACATACTCTTCGAGCCCATGTTGCCAATAAACATACAGAAGAAaagccttttgagtgcacATTGTGTGGTAAAAAGTACAGTAGAAGCATTGACTTGAAGAATCATCATGATAATACTCATGTTGCCAATAAACCTGGTTATAaaggtaaaaaaaagaaaccacAGCCTCAGGAATGTCCAATATGCAAAAAGCAGTTAAGTAATAAACATATTCTCAGAGAACATCTTAGAATCCATACTGGGGAAAAGGCATATGAGTGCCCAATTTGCCAGAAGAAGATAAGTTCTCTCAGTAATATCCAGGCGCATCTTAGAACTCACTCTGGGGAGAGGCCTTTTGAGTGCACAGTGTGCAGCAAGCGTTTTAGCCTCAAAGCTAATCTTAAAACGCATCTTAGAAGACACACAGGGGAAaggcctttcgagtgcacaatATGCAAAAAGAGGTTCAATCAATCATGTGAGCTCAAAGAGCATACTAGAATTCACACAGGTGAAAAGCCTTATGAGTGCACTGTTTGTAATAGGAAGTTCACACAATCAAGTACTCTCAAGAAACATTTTAAAACTCATGAACCAAAGCCGGAGCTGCAATTAACGATTGGGTTACTCTTATTGACTCAAAATGAATGTGAAGGTTTGAACCATCCTGCTTCCCTCTGCTTAAGTCGCCAACTTGTCTACCAGTTTCGCGCTGCTTCTGTCAACATGCTCAGCAAGGCCCTGAGCACCCGGAGGTCCCCAAGAGGAGGGCCTGGTGTTTCAACGGAGAAGGCCAAGAGGCAGGTTTTTGATGAAAGCCATTCCGACCCTGATGATCCTGATAGTGACTGTGACGTTGCTCTTCCTGCATCCATCGCACCGAACCTGAGTCAAAGGAAGAAAAGTGGAAACCACCTGACAAAAGAGGAGAAATATAATGAATTTTTGCGCCTGTGTGCCAAGGCTGGGAAACTGGTTTCAAAATGTGCCAGGGGGGAGTTTCTGGATAGATGCAAGATGATGAAAGATATAATATCTAGTTGGAAGAAGAATGTAGAAGTTAGAGTCACCTCAAACACTTCAGGTGTCTCTGACACGTTTCAGAACACAAGTTTGGGACTAGAATCTCTAAAAGAAACGTCTCACAATGAAAGAAATATGTATCACTGCGTCATCTGCCATCAGTTGTATCCTACAGCACTAGGACTTAGATTACACTTGAGAATCCACACAGGGGTAAAACCCTATGAGTGCCGAGTTTGCGATGAGAAGTTTGAACAGTCAAGTGCTCTTGGAGTGCACTTGAGAACACATGCTGGAGGAAAGCCAGCGGAAAACAATGTGAAAGGAGTGAGGAATGATACGAGTCATGTGGACAGCAGGATCACAAATGGTACAGCTCCTCATACTCTGGCTGATACTAAACGACATGATGGTGGCTTCAGTAATCAAGAAATCTCTGTTACCTCATCACAGACTGAAGATGATTGTGGTTTGCCCTCAGCCCTCATCAAGGATAAAACCAACCAGGATGATAATGATGAAGATAATTTTAAGGAGGTTACAAGTTCTGAGGACTCTATTGATTTAGCTTCAAGTGATGACGATTCAGATTCACCTTcaCCCCTCATCAAGGATGAAACCAACCAGGATAAAACCAACCAGGGTAAAACCAACCAGGATAAAACCCACAGAGATGAAACCAACGAGGATGATAATGATGCAGACAATTTTAAGGAGGTTACAAGTCCTGAAAACTCTAATGATTTAGCTTCAAGTGATGACGATTCATATGCACCTTtATTTGAAGAGGATTTCTCAGATTCTGAGTGTTCTTCAGGCGTCCCTGATGATCTTTGGAGTGCCAAGAACAAGCCGgaacagaaaaagaagaaggctGTAACAAAAGATAGATTAGTTTTGTGCCATGTTTGTAGTAAGATGATTAAACCTCAAAGACTTCGAGCACACTTAAGAGTCCACTCAGGGGAGAAACCTTACGAATGTGAAGTTTGCAATATGAAGTTCAGTCAAAGAGGTAATCTTAGGAGCCATATGACTACCCATTCAGAGGAGAAGCCTCATAAGTGCACTATTTGTGAAAAGAAATTTAGTACTATGAGAGGTCTCAAAGGTCATCTTCAAATCCATAGAGGTGAAAAGCCTTATGAGTGCAAGCTGTGCTCGAGGAAGTTTAGTAACGCATCTAATCTTAAGAAACATGTTAGAGTGCATACAGGAGAAAAGCCATTTGAATGTACAATTTGCAATATGAGGTATACACAAAAACATAGTCTTGATTCTCATGTTGCCAATTCCCACACAGGAGTGAAGCCTTTTGAATGCACACAATGTAGCAGGAAGTTCAGATTTAGGAGTCAGCTGAATGCTCATATTAAAGCCCATTCAAAGCAAAGGAAAAAATATACGGGTGAAAAGCCCTTTGAGTGCTCAACTTGCTATAAGAAGTTTAGCAACAAACATATTCTGAGGAGACATGTCGAGGTAATCCACAATGGGGTATTGTCATTTAAATGCTCAATTTGCAACAAGCTTCTTACTAGCTCTTCTGGTCTCCAAGCCCATCTTAGAACCCACACTGGAGAGAGGCCATTTGAGTGCACTACTTGTGGTAAAAGGTTCACCCTCAAGGGTAATCTTCAAACTCATATTCGAACCCATACAGGGGAGAAGCAATTTGAGTGCCCAGTTTGCAACAAAAGATTTAATCAGTCATGTCAACTCAAATCTCATGCTCGAGTGCACACTGGTGAAAAGCCTTATGAGTGCAAAGTGTGCAATAAGAAATTTTCCCAAGGAAGCACACTAAGAAAACATCTTGTGACTCATGATACCAAATAG
Protein Sequence: MKLPNPLSVSPSSSSPASLAMLTNAPGTWRSATGSLRVSSEKSKRHFVDESQSDPDDPDSDCDVAPPPLVPSNLTQGNKSGQKMTREEKCEEFLCLYARARNLVSQCVGEQLLKRCKIMTEIISSWEKNIEVEVVQNTSGGKHVPNGTQKKRAPLCLDAPNIQDKSNQKKNTIQERRMFSCTMCSKMLTTPLALKLHLRIHTGEKPFECQVCNKKFEQSSSLGVHLRTHDEKAGENTLKAERSVMCHIDSRITNTSGDGDISSDIEEISLSVVDAPHIVVDTEQENGDINCQENSRTLSQSEDVSHLPSPHIQDETSQDDDNNDNFKEVESPENSIDVAASDDDGSYSPSVGDKSSDSESSSDESNNVRNKNIQPKPDKIIHEGKTMFPCTMCSKMLTTALGFRLHLRTHTGEKPYECHVCNKKYRQSSALAVHKRTHTGEKPYECAVCGKKYNRKIHLRNHLQGHEQPSEGNAPKEKRTFLCHICSKMFTAQKSLSSHLRTHTGEKPYMCHFCDKTFSQSGNLRTHIRTHTGEKPSKCTICDKKFNRSSALRYHLLSHQGEKPEECTICSMKFRGKANLKRHIRTHTGEKLYTCTFCEKKFARKHTLRAHVANKHTEEKPFECTLCGKKYSRSIDLKNHHDNTHVANKPGYKGKKKKPQPQECPICKKQLSNKHILREHLRIHTGEKAYECPICQKKISSLSNIQAHLRTHSGERPFECTVCSKRFSLKANLKTHLRRHTGERPFECTICKKRFNQSCELKEHTRIHTGEKPYECTVCNRKFTQSSTLKKHFKTHEPKPELQLTIGLLLLTQNECEGLNHPASLCLSRQLVYQFRAASVNMLSKALSTRRSPRGGPGVSTEKAKRQVFDESHSDPDDPDSDCDVALPASIAPNLSQRKKSGNHLTKEEKYNEFLRLCAKAGKLVSKCARGEFLDRCKMMKDIISSWKKNVEVRVTSNTSGVSDTFQNTSLGLESLKETSHNERNMYHCVICHQLYPTALGLRLHLRIHTGVKPYECRVCDEKFEQSSALGVHLRTHAGGKPAENNVKGVRNDTSHVDSRITNGTAPHTLADTKRHDGGFSNQEISVTSSQTEDDCGLPSALIKDKTNQDDNDEDNFKEVTSSEDSIDLASSDDDSDSPSPLIKDETNQDKTNQGKTNQDKTHRDETNEDDNDADNFKEVTSPENSNDLASSDDDSYAPLFEEDFSDSECSSGVPDDLWSAKNKPEQKKKKAVTKDRLVLCHVCSKMIKPQRLRAHLRVHSGEKPYECEVCNMKFSQRGNLRSHMTTHSEEKPHKCTICEKKFSTMRGLKGHLQIHRGEKPYECKLCSRKFSNASNLKKHVRVHTGEKPFECTICNMRYTQKHSLDSHVANSHTGVKPFECTQCSRKFRFRSQLNAHIKAHSKQRKKYTGEKPFECSTCYKKFSNKHILRRHVEVIHNGVLSFKCSICNKLLTSSSGLQAHLRTHTGERPFECTTCGKRFTLKGNLQTHIRTHTGEKQFECPVCNKRFNQSCQLKSHARVHTGEKPYECKVCNKKFSQGSTLRKHLVTHDTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435205;
90% Identity: iTF_01435205;
80% Identity: iTF_01435205;