Tpal000948.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:3611065-3619290[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.00087 0.028 14.6 0.4 1 23 179 201 179 201 0.98
2 29 5.3e-06 0.00017 21.5 0.7 1 23 207 229 207 229 0.98
3 29 0.0037 0.12 12.6 0.6 1 23 388 410 388 410 0.98
4 29 4.7e-06 0.00015 21.7 2.4 1 23 416 438 416 438 0.99
5 29 2.6e-05 0.00084 19.3 1.4 1 23 444 466 444 466 0.97
6 29 0.00019 0.0061 16.6 3.2 1 23 481 503 481 503 0.96
7 29 1.4e-07 4.5e-06 26.5 4.0 1 23 509 531 509 531 0.98
8 29 7.1e-06 0.00023 21.1 1.5 2 23 538 559 537 559 0.97
9 29 7.7e-06 0.00025 21.0 1.2 2 23 566 587 566 587 0.98
10 29 0.00032 0.01 15.9 3.2 1 23 593 616 593 616 0.94
11 29 0.00023 0.0074 16.4 2.4 1 23 622 645 622 645 0.93
12 29 0.0094 0.3 11.3 1.3 2 23 663 684 662 684 0.97
13 29 2.4e-05 0.00075 19.5 0.2 1 23 690 712 690 712 0.99
14 29 6.2e-06 0.0002 21.3 2.0 1 23 718 740 718 740 0.98
15 29 5.6e-05 0.0018 18.3 4.0 1 23 746 768 746 768 0.98
16 29 5.5e-06 0.00018 21.5 4.1 1 23 774 796 774 796 0.99
17 29 0.079 2.5 8.4 1.0 1 23 987 1009 987 1009 0.98
18 29 3.5e-05 0.0011 19.0 0.1 1 23 1015 1037 1015 1037 0.99
19 29 1.5 49 4.3 1.2 3 23 1241 1260 1240 1260 0.97
20 29 1.6e-06 5e-05 23.2 1.0 1 23 1266 1288 1266 1288 0.99
21 29 0.00044 0.014 15.5 2.2 1 23 1294 1316 1294 1316 0.98
22 29 4.8e-07 1.5e-05 24.8 1.5 1 23 1322 1344 1322 1344 0.99
23 29 0.0033 0.1 12.8 1.5 1 23 1350 1373 1350 1373 0.93
24 29 3.3e-05 0.001 19.0 1.9 1 23 1379 1401 1379 1401 0.97
25 29 0.0057 0.18 12.0 2.6 1 23 1414 1437 1414 1437 0.95
26 29 1.5e-05 0.00047 20.1 0.6 1 23 1443 1465 1443 1465 0.99
27 29 2.6e-07 8.1e-06 25.7 1.5 1 23 1471 1493 1471 1493 0.99
28 29 9.9e-06 0.00031 20.7 2.4 1 23 1499 1521 1499 1521 0.98
29 29 8.7e-06 0.00027 20.9 1.6 1 23 1527 1549 1527 1549 0.98

Sequence Information

Coding Sequence
ATGAAGTTGCCAAATCCCCTATCAGTTTCACCCTCGTCCTCCTCTCCTGCTTCTCTCGCTATGCTCACCAACGCCCCAGGAACCTGGAGGTCTGCGACAGGAAGCCTTAGGGTTTCATCGGAGAAGTCGAAAAGGCATTTCGTTGACGAAAGCCAATCAGACCCTGATGATCCTGATAGTGACTGTGATgttgctcctcctcctctcgtCCCCTCAAACCTGACTCAAGGGAATAAAAGTGGGCAAAAAATGACAAGGGAAGAAAAATGTGAAGAATTTTTGTGCCTGTATGCAAGGGCTAGGAATTTGGTTTCGCAATGTGTTGGCGAACAGCTTCTCAAAAGGTGCAAGATAATGACAGAAATTATATCTAGTTGGGAAAAGAATATAGAAGTTGAAGTCGTCCAGAACACTTCAGGTGGAAAACATGTCCCTAATGGCACCCAAAAAAAGAGAGCCCCTCTTTGCCTTGATGCACCCAACATCCAGGATAAAAGCAACCAAAAGAAAAATACTATCCAAGAACGAAGGATGTTTTCTTGCACCATGTGCAGTAAGATGTTAACTACGCCACTAGCACTTAAATTACACTTAAGAATCCATACAGGGGAAAAGCCTTTTGAGTGCCAAGTTTGCAATAAGAAGTTTGAACAGTCAAGCTCTCTGGGAGTTCATTTGAGAACACATGATGAAAAGGCAGGGGAGAACACTCTGAAAGCAGAGAGGTCGGTTATGTGCCACATTGATAGCAGGATAACAAATACTTCAGGTGATGGAGATATCTCCTCTGACATCGAGGAAATTTCCCTTTCTGTTGTTGATGCTCCTCACATCGTGGTCGATACTGAACAAGAGAATGGTGACATCAATTGTCAAGAAAACTCTAGAACTTTGTCACAAAGTGAAGATGTTTCACATTTGCCCTCACCGCACATCCAGGATGAAACCAGCCAGGATGATGATAATAATGACAATTTTAAGGAAGTTGAAAGTCCTGAGAATTCTATTGATGTGGCTGCAAGTGATGATGATGGTTCATATTCACCTTCTGTTGGTGACAAGTCCTCGGATTCTGAGAGCTCTTCAGATGAATCTAATAATGTGCGTAATAAGAATATTCAACCCAAACCGGACAAGATTATCCACGAAGGAAAAACTATGTTCCCTTGCACCATGTGTTCTAAGATGTTGACTACCGCACTCGGATTTAGATTACACTTAAGAACCCATACAGGGGAAAAGCCTTATGAGTGCCATGTTTGCAATAAGAAGTATCGACAATCAAGTGCTCTTGCAGTTCATAAAAGAACACATACTGGAGAAAAGCCTTATGAATGTGCTGTTTGCGGTAAGAAGTATAATAGAAAGATCCATCTAAGAAATCATCTTCAAGGCCATGAACAGCCCAGTGAGGGTAATGCTCCCAAAGAAAAAAGGACATTTTTGTGCCACATCTGCAGCAAGATGTTTACTGCACAAAAATCACTCAGCTCACACCTACGAACTCATACGGGAGAAAAACCCTACATGTGCCATTTTTGTGATAAAACTTTCTCGCAGAGTGGTAACCTTAGAACTCACATAAGAACCCACACTGGAGAAAAGCCTTCGAAATGCACTATTTGTGACAAGAAGTTTAATAGAAGTAGTGCTCTGAGGTATCATCTTCTCTCCCACCAGGGGGAAAAGCCAGAGGAGTGTACTATTTGTTCCATGAAGTTCAGAGGCAAAGCCAATCTCAAAAGACACATTAGAACCCATACTGGTGAGAAACTCTATACGTGCACATTTTGCGAGAAGAAGTTTGCCAGAAAACATACTCTTCGAGCCCATGTTGCCAATAAACATACAGAAGAAaagccttttgagtgcacATTGTGTGGTAAAAAGTACAGTAGAAGCATTGACTTGAAGAATCATCATGATAATACTCATGTTGCCAATAAACCTGGTTATAaaggtaaaaaaaagaaaccacAGCCTCAGGAATGTCCAATATGCAAAAAGCAGTTAAGTAATAAACATATTCTCAGAGAACATCTTAGAATCCATACTGGGGAAAAGGCATATGAGTGCCCAATTTGCCAGAAGAAGATAAGTTCTCTCAGTAATATCCAGGCGCATCTTAGAACTCACTCTGGGGAGAGGCCTTTTGAGTGCACAGTGTGCAGCAAGCGTTTTAGCCTCAAAGCTAATCTTAAAACGCATCTTAGAAGACACACAGGGGAAaggcctttcgagtgcacaatATGCAAAAAGAGGTTCAATCAATCATGTGAGCTCAAAGAGCATACTAGAATTCACACAGGTGAAAAGCCTTATGAGTGCACTGTTTGTAATAGGAAGTTCACACAATCAAGTACTCTCAAGAAACATTTTAAAACTCATGAACCAAAGCCGGAGCTGCAATTAACGATTGGGTTACTCTTATTGACTCAAAATGAATGTGAAGGTTTGAACCATCCTGCTTCCCTCTGCTTAAGTCGCCAACTTGTCTACCAGTTTCGCGCTGCTTCTGTCAACATGCTCAGCAAGGCCCTGAGCACCCGGAGGTCCCCAAGAGGAGGGCCTGGTGTTTCAACGGAGAAGGCCAAGAGGCAGGTTTTTGATGAAAGCCATTCCGACCCTGATGATCCTGATAGTGACTGTGACGTTGCTCTTCCTGCATCCATCGCACCGAACCTGAGTCAAAGGAAGAAAAGTGGAAACCACCTGACAAAAGAGGAGAAATATAATGAATTTTTGCGCCTGTGTGCCAAGGCTGGGAAACTGGTTTCAAAATGTGCCAGGGGGGAGTTTCTGGATAGATGCAAGATGATGAAAGATATAATATCTAGTTGGAAGAAGAATGTAGAAGTTAGAGTCACCTCAAACACTTCAGGTGTCTCTGACACGTTTCAGAACACAAGTTTGGGACTAGAATCTCTAAAAGAAACGTCTCACAATGAAAGAAATATGTATCACTGCGTCATCTGCCATCAGTTGTATCCTACAGCACTAGGACTTAGATTACACTTGAGAATCCACACAGGGGTAAAACCCTATGAGTGCCGAGTTTGCGATGAGAAGTTTGAACAGTCAAGTGCTCTTGGAGTGCACTTGAGAACACATGCTGGAGGAAAGCCAGCGGAAAACAATGTGAAAGGAGTGAGGAATGATACGAGTCATGTGGACAGCAGGATCACAAATGGTACAGCTCCTCATACTCTGGCTGATACTAAACGACATGATGGTGGCTTCAGTAATCAAGAAATCTCTGTTACCTCATCACAGACTGAAGATGATTGTGGTTTGCCCTCAGCCCTCATCAAGGATAAAACCAACCAGGATGATAATGATGAAGATAATTTTAAGGAGGTTACAAGTTCTGAGGACTCTATTGATTTAGCTTCAAGTGATGACGATTCAGATTCACCTTcaCCCCTCATCAAGGATGAAACCAACCAGGATAAAACCAACCAGGGTAAAACCAACCAGGATAAAACCCACAGAGATGAAACCAACGAGGATGATAATGATGCAGACAATTTTAAGGAGGTTACAAGTCCTGAAAACTCTAATGATTTAGCTTCAAGTGATGACGATTCATATGCACCTTtATTTGAAGAGGATTTCTCAGATTCTGAGTGTTCTTCAGGCGTCCCTGATGATCTTTGGAGTGCCAAGAACAAGCCGgaacagaaaaagaagaaggctGTAACAAAAGATAGATTAGTTTTGTGCCATGTTTGTAGTAAGATGATTAAACCTCAAAGACTTCGAGCACACTTAAGAGTCCACTCAGGGGAGAAACCTTACGAATGTGAAGTTTGCAATATGAAGTTCAGTCAAAGAGGTAATCTTAGGAGCCATATGACTACCCATTCAGAGGAGAAGCCTCATAAGTGCACTATTTGTGAAAAGAAATTTAGTACTATGAGAGGTCTCAAAGGTCATCTTCAAATCCATAGAGGTGAAAAGCCTTATGAGTGCAAGCTGTGCTCGAGGAAGTTTAGTAACGCATCTAATCTTAAGAAACATGTTAGAGTGCATACAGGAGAAAAGCCATTTGAATGTACAATTTGCAATATGAGGTATACACAAAAACATAGTCTTGATTCTCATGTTGCCAATTCCCACACAGGAGTGAAGCCTTTTGAATGCACACAATGTAGCAGGAAGTTCAGATTTAGGAGTCAGCTGAATGCTCATATTAAAGCCCATTCAAAGCAAAGGAAAAAATATACGGGTGAAAAGCCCTTTGAGTGCTCAACTTGCTATAAGAAGTTTAGCAACAAACATATTCTGAGGAGACATGTCGAGGTAATCCACAATGGGGTATTGTCATTTAAATGCTCAATTTGCAACAAGCTTCTTACTAGCTCTTCTGGTCTCCAAGCCCATCTTAGAACCCACACTGGAGAGAGGCCATTTGAGTGCACTACTTGTGGTAAAAGGTTCACCCTCAAGGGTAATCTTCAAACTCATATTCGAACCCATACAGGGGAGAAGCAATTTGAGTGCCCAGTTTGCAACAAAAGATTTAATCAGTCATGTCAACTCAAATCTCATGCTCGAGTGCACACTGGTGAAAAGCCTTATGAGTGCAAAGTGTGCAATAAGAAATTTTCCCAAGGAAGCACACTAAGAAAACATCTTGTGACTCATGATACCAAATAG
Protein Sequence
MKLPNPLSVSPSSSSPASLAMLTNAPGTWRSATGSLRVSSEKSKRHFVDESQSDPDDPDSDCDVAPPPLVPSNLTQGNKSGQKMTREEKCEEFLCLYARARNLVSQCVGEQLLKRCKIMTEIISSWEKNIEVEVVQNTSGGKHVPNGTQKKRAPLCLDAPNIQDKSNQKKNTIQERRMFSCTMCSKMLTTPLALKLHLRIHTGEKPFECQVCNKKFEQSSSLGVHLRTHDEKAGENTLKAERSVMCHIDSRITNTSGDGDISSDIEEISLSVVDAPHIVVDTEQENGDINCQENSRTLSQSEDVSHLPSPHIQDETSQDDDNNDNFKEVESPENSIDVAASDDDGSYSPSVGDKSSDSESSSDESNNVRNKNIQPKPDKIIHEGKTMFPCTMCSKMLTTALGFRLHLRTHTGEKPYECHVCNKKYRQSSALAVHKRTHTGEKPYECAVCGKKYNRKIHLRNHLQGHEQPSEGNAPKEKRTFLCHICSKMFTAQKSLSSHLRTHTGEKPYMCHFCDKTFSQSGNLRTHIRTHTGEKPSKCTICDKKFNRSSALRYHLLSHQGEKPEECTICSMKFRGKANLKRHIRTHTGEKLYTCTFCEKKFARKHTLRAHVANKHTEEKPFECTLCGKKYSRSIDLKNHHDNTHVANKPGYKGKKKKPQPQECPICKKQLSNKHILREHLRIHTGEKAYECPICQKKISSLSNIQAHLRTHSGERPFECTVCSKRFSLKANLKTHLRRHTGERPFECTICKKRFNQSCELKEHTRIHTGEKPYECTVCNRKFTQSSTLKKHFKTHEPKPELQLTIGLLLLTQNECEGLNHPASLCLSRQLVYQFRAASVNMLSKALSTRRSPRGGPGVSTEKAKRQVFDESHSDPDDPDSDCDVALPASIAPNLSQRKKSGNHLTKEEKYNEFLRLCAKAGKLVSKCARGEFLDRCKMMKDIISSWKKNVEVRVTSNTSGVSDTFQNTSLGLESLKETSHNERNMYHCVICHQLYPTALGLRLHLRIHTGVKPYECRVCDEKFEQSSALGVHLRTHAGGKPAENNVKGVRNDTSHVDSRITNGTAPHTLADTKRHDGGFSNQEISVTSSQTEDDCGLPSALIKDKTNQDDNDEDNFKEVTSSEDSIDLASSDDDSDSPSPLIKDETNQDKTNQGKTNQDKTHRDETNEDDNDADNFKEVTSPENSNDLASSDDDSYAPLFEEDFSDSECSSGVPDDLWSAKNKPEQKKKKAVTKDRLVLCHVCSKMIKPQRLRAHLRVHSGEKPYECEVCNMKFSQRGNLRSHMTTHSEEKPHKCTICEKKFSTMRGLKGHLQIHRGEKPYECKLCSRKFSNASNLKKHVRVHTGEKPFECTICNMRYTQKHSLDSHVANSHTGVKPFECTQCSRKFRFRSQLNAHIKAHSKQRKKYTGEKPFECSTCYKKFSNKHILRRHVEVIHNGVLSFKCSICNKLLTSSSGLQAHLRTHTGERPFECTTCGKRFTLKGNLQTHIRTHTGEKQFECPVCNKRFNQSCQLKSHARVHTGEKPYECKVCNKKFSQGSTLRKHLVTHDTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01435681;
90% Identity
iTF_01435681;
80% Identity
iTF_01435681;