Tpal003832.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:10355230-10364340[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.015 2.8 7.8 0.0 12 45 73 108 67 114 0.74 2 13 0.77 1.4e+02 2.4 0.0 22 46 113 137 108 145 0.81 3 13 4 7.2e+02 0.1 0.0 23 47 142 166 138 172 0.81 4 13 7.6 1.4e+03 -0.8 0.0 21 47 168 194 164 201 0.80 5 13 0.47 86 3.0 0.0 21 47 196 222 188 228 0.86 6 13 0.62 1.1e+02 2.7 0.0 21 47 224 250 221 255 0.86 7 13 0.0038 0.69 9.7 0.0 21 48 252 279 248 285 0.86 8 13 5.9 1.1e+03 -0.5 0.0 23 47 282 306 276 312 0.81 9 13 0.25 45 3.9 0.0 21 47 308 334 304 339 0.86 10 13 0.0053 0.97 9.3 0.0 21 45 336 360 332 363 0.91 11 13 0.09 16 5.3 0.0 21 46 364 389 361 396 0.86 12 13 5.6 1e+03 -0.4 0.0 23 46 394 417 389 423 0.81 13 13 0.0083 1.5 8.7 0.0 21 45 420 444 416 451 0.91
Sequence Information
- Coding Sequence
- ATGCCGCCGCTGCCAACATGTTGTTCGGGTGGTGGAGAGCGCCGCTCCCCGTCGAAGCGGAATGTGGATGGCCCAATCAACTCAGGAAAGAAGCATTTCGAATGCGCAGTTTGCTACAAGAAGTTTCACCGAAGAGGAGGTCTTGCAATTCATCTTAGAACCcatacaggggagaagcctttcgagtgcacggTCTGCAAAAAGGAGTTCAGCCGAACAGATCACCCAAGAACTCACCTTAAAACTCACACAGGGGAGAaacctttcgagtgcacagtctGTGACAAGTTTACTCAAACAAGTAATCTGAGAACTCACCTTAAGACCCACACAGAGGAGAAGTCTTTCGAGTGCATGGTCTGTGACAAGAAGTTTACTCAAGCAAGTAGTCTAAGAACTCATCTTATGACCCACACAGGgaagaagcctttcgagtgcacggTCTGCAAAAAGAAGTTTATCAATGAAGGTCATCTAAGAACTCACCTGAACACCcacacaggggagaagcctttcgagtgcacggCCTGCAAAAAGAAGTTTATCCATGAAGGTTATCTAAGAAGTCACCTGAAGACCcacacaggggagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACCCACGCAAGTAGTCTAAGAACTCATCTTAAGACTcacacaggggagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACCCACGCAAGTAGTCTAAGAACTCATCTTAAGACCcacacaggggagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACTCAAACAAGTAATCTAAGAACTCACCTGAAGACCCACACAGGgaagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACGCTAGCAAGTTATCTAAGAAATCACCTGAAGACCcacacaggggagaagcctttcgagtgctcGGTCTGCAAAAAGAAGTTCAACCGAACAGATCACCTAAGAACTCACCTTAAGACTcacacaggggagaagcctttcgagtgcacagtctGTGACAAGAAGTTTACTCAAACAAGTAATCTAAGAACTCACCTTAAGACCCACACAgaggagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACTCAAGCAAGTAGTCTAAGAACTCATCTTATGACCCACACAGGGaggaagcctttcgagtgcacggTCTGCAAAAAGAAGTTTATCAATGAAGGTCATCTAAGAACTCACCTGAAGACCcacacaggggagaagcctttcgagtgcacggTATGCAAAAAGAAGTTTATTCAAGCAGGTAATCTAAGAACTCACCTTAAGACCCACACAGGGGAGAAGTCTTACGAGTGCACGGTCTGCAATAAGAAGTTCACTCGTGGAGGTTATCTAAGAACTCATCTCCAAACCCATGTaggagtgcacagtttgcgcTCTGACGTTTAG
- Protein Sequence
- MPPLPTCCSGGGERRSPSKRNVDGPINSGKKHFECAVCYKKFHRRGGLAIHLRTHTGEKPFECTVCKKEFSRTDHPRTHLKTHTGEKPFECTVCDKFTQTSNLRTHLKTHTEEKSFECMVCDKKFTQASSLRTHLMTHTGKKPFECTVCKKKFINEGHLRTHLNTHTGEKPFECTACKKKFIHEGYLRSHLKTHTGEKPFECMVCDKKFTHASSLRTHLKTHTGEKPFECMVCDKKFTHASSLRTHLKTHTGEKPFECMVCDKKFTQTSNLRTHLKTHTGKKPFECMVCDKKFTLASYLRNHLKTHTGEKPFECSVCKKKFNRTDHLRTHLKTHTGEKPFECTVCDKKFTQTSNLRTHLKTHTEEKPFECMVCDKKFTQASSLRTHLMTHTGRKPFECTVCKKKFINEGHLRTHLKTHTGEKPFECTVCKKKFIQAGNLRTHLKTHTGEKSYECTVCNKKFTRGGYLRTHLQTHVGVHSLRSDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435216;
- 90% Identity
- iTF_01435216;
- 80% Identity
- iTF_01435216;