Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:10355230-10364340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 8.4e-05 0.0027 17.8 1.2 1 23 33 55 33 55 0.98

2 16 0.0012 0.037 14.2 3.6 1 23 61 83 61 83 0.98

3 16 0.00021 0.0066 16.5 2.0 1 23 89 110 89 110 0.97

4 16 2.8e-07 9.1e-06 25.5 1.0 1 23 116 138 116 138 0.98

5 16 3.7e-06 0.00012 22.0 2.7 1 23 144 166 144 166 0.98

6 16 0.00018 0.0056 16.7 3.1 1 23 172 194 172 194 0.98

7 16 8.9e-07 2.8e-05 24.0 3.1 1 23 200 222 200 222 0.98

8 16 8.9e-07 2.8e-05 24.0 3.1 1 23 228 250 228 250 0.98

9 16 4.2e-07 1.3e-05 25.0 2.3 1 23 256 278 256 278 0.98

10 16 3.2e-06 0.0001 22.2 1.3 1 23 284 306 284 306 0.98

11 16 6.8e-06 0.00021 21.2 5.2 1 23 312 334 312 334 0.98

12 16 1.1e-07 3.4e-06 26.9 2.6 1 23 340 362 340 362 0.98

13 16 2.8e-07 9.1e-06 25.5 1.0 1 23 368 390 368 390 0.98

14 16 3.8e-06 0.00012 22.0 3.2 1 23 396 418 396 418 0.98

15 16 4.5e-07 1.4e-05 24.9 1.2 1 23 424 446 424 446 0.98

16 16 3.2e-06 0.0001 22.2 1.5 1 23 452 474 452 474 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	8.4e-05	0.0027	17.8	1.2	1	23	33	55	33	55	0.98
2	16	0.0012	0.037	14.2	3.6	1	23	61	83	61	83	0.98
3	16	0.00021	0.0066	16.5	2.0	1	23	89	110	89	110	0.97
4	16	2.8e-07	9.1e-06	25.5	1.0	1	23	116	138	116	138	0.98
5	16	3.7e-06	0.00012	22.0	2.7	1	23	144	166	144	166	0.98
6	16	0.00018	0.0056	16.7	3.1	1	23	172	194	172	194	0.98
7	16	8.9e-07	2.8e-05	24.0	3.1	1	23	200	222	200	222	0.98
8	16	8.9e-07	2.8e-05	24.0	3.1	1	23	228	250	228	250	0.98
9	16	4.2e-07	1.3e-05	25.0	2.3	1	23	256	278	256	278	0.98
10	16	3.2e-06	0.0001	22.2	1.3	1	23	284	306	284	306	0.98
11	16	6.8e-06	0.00021	21.2	5.2	1	23	312	334	312	334	0.98
12	16	1.1e-07	3.4e-06	26.9	2.6	1	23	340	362	340	362	0.98
13	16	2.8e-07	9.1e-06	25.5	1.0	1	23	368	390	368	390	0.98
14	16	3.8e-06	0.00012	22.0	3.2	1	23	396	418	396	418	0.98
15	16	4.5e-07	1.4e-05	24.9	1.2	1	23	424	446	424	446	0.98
16	16	3.2e-06	0.0001	22.2	1.5	1	23	452	474	452	474	0.99

Sequence Information

Coding Sequence: ATGCCGCCGCTGCCAACATGTTGTTCGGGTGGTGGAGAGCGCCGCTCCCCGTCGAAGCGGAATGTGGATGGCCCAATCAACTCAGGAAAGAAGCATTTCGAATGCGCAGTTTGCTACAAGAAGTTTCACCGAAGAGGAGGTCTTGCAATTCATCTTAGAACCcatacaggggagaagcctttcgagtgcacggTCTGCAAAAAGGAGTTCAGCCGAACAGATCACCCAAGAACTCACCTTAAAACTCACACAGGGGAGAaacctttcgagtgcacagtctGTGACAAGTTTACTCAAACAAGTAATCTGAGAACTCACCTTAAGACCCACACAGAGGAGAAGTCTTTCGAGTGCATGGTCTGTGACAAGAAGTTTACTCAAGCAAGTAGTCTAAGAACTCATCTTATGACCCACACAGGgaagaagcctttcgagtgcacggTCTGCAAAAAGAAGTTTATCAATGAAGGTCATCTAAGAACTCACCTGAACACCcacacaggggagaagcctttcgagtgcacggCCTGCAAAAAGAAGTTTATCCATGAAGGTTATCTAAGAAGTCACCTGAAGACCcacacaggggagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACCCACGCAAGTAGTCTAAGAACTCATCTTAAGACTcacacaggggagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACCCACGCAAGTAGTCTAAGAACTCATCTTAAGACCcacacaggggagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACTCAAACAAGTAATCTAAGAACTCACCTGAAGACCCACACAGGgaagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACGCTAGCAAGTTATCTAAGAAATCACCTGAAGACCcacacaggggagaagcctttcgagtgctcGGTCTGCAAAAAGAAGTTCAACCGAACAGATCACCTAAGAACTCACCTTAAGACTcacacaggggagaagcctttcgagtgcacagtctGTGACAAGAAGTTTACTCAAACAAGTAATCTAAGAACTCACCTTAAGACCCACACAgaggagaagcctttcgagtgcatgGTCTGTGACAAGAAGTTTACTCAAGCAAGTAGTCTAAGAACTCATCTTATGACCCACACAGGGaggaagcctttcgagtgcacggTCTGCAAAAAGAAGTTTATCAATGAAGGTCATCTAAGAACTCACCTGAAGACCcacacaggggagaagcctttcgagtgcacggTATGCAAAAAGAAGTTTATTCAAGCAGGTAATCTAAGAACTCACCTTAAGACCCACACAGGGGAGAAGTCTTACGAGTGCACGGTCTGCAATAAGAAGTTCACTCGTGGAGGTTATCTAAGAACTCATCTCCAAACCCATGTaggagtgcacagtttgcgcTCTGACGTTTAG
Protein Sequence: MPPLPTCCSGGGERRSPSKRNVDGPINSGKKHFECAVCYKKFHRRGGLAIHLRTHTGEKPFECTVCKKEFSRTDHPRTHLKTHTGEKPFECTVCDKFTQTSNLRTHLKTHTEEKSFECMVCDKKFTQASSLRTHLMTHTGKKPFECTVCKKKFINEGHLRTHLNTHTGEKPFECTACKKKFIHEGYLRSHLKTHTGEKPFECMVCDKKFTHASSLRTHLKTHTGEKPFECMVCDKKFTHASSLRTHLKTHTGEKPFECMVCDKKFTQTSNLRTHLKTHTGKKPFECMVCDKKFTLASYLRNHLKTHTGEKPFECSVCKKKFNRTDHLRTHLKTHTGEKPFECTVCDKKFTQTSNLRTHLKTHTEEKPFECMVCDKKFTQASSLRTHLMTHTGRKPFECTVCKKKFINEGHLRTHLKTHTGEKPFECTVCKKKFIQAGNLRTHLKTHTGEKSYECTVCNKKFTRGGYLRTHLQTHVGVHSLRSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435678;
90% Identity: iTF_01435678;
80% Identity: iTF_01435678;