Tpal013813.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:9106723-9112099[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.62 1.1e+02 2.6 0.1 14 51 20 57 14 59 0.85 2 12 3.8 7e+02 0.1 0.0 21 51 55 85 52 88 0.81 3 12 5.8 1.1e+03 -0.4 0.0 23 45 85 107 79 111 0.83 4 12 0.00034 0.062 13.1 0.0 21 45 111 135 106 138 0.91 5 12 0.0028 0.52 10.1 0.0 21 51 139 169 135 170 0.87 6 12 0.18 32 4.4 0.0 22 46 168 192 165 194 0.90 7 12 0.00076 0.14 12.0 0.0 21 45 195 219 191 222 0.92 8 12 0.036 6.7 6.6 0.0 21 52 223 254 219 255 0.87 9 12 3.8 7e+02 0.1 0.0 22 45 252 275 247 278 0.85 10 12 0.00025 0.046 13.5 0.1 21 46 279 304 273 310 0.87 11 12 0.086 16 5.4 0.0 21 45 307 331 303 334 0.90 12 12 0.00034 0.062 13.1 0.1 21 45 335 359 331 362 0.90
Sequence Information
- Coding Sequence
- ATGGCCCTTGAGAGTGCACAgtgcggcgaggtggcggcagcgtcagcggcgccgcgtgctccACGGGGAAAGCGTGGAGGGAAGCAGGCGCTCCACTGTGCAGTCTGCGAGAAGGAGTTCCGATTCAAGAGTGTTCTCCAGGCGCACTTGcggatccacaccggggagaagcctttcgagtgcattTTCTGCGAGGAGAAGTTTGCTCAAAAGAGTCACCTAACAACGCACCTTCGCACCCACACCAAGGTGAAGCCGTTTGAGTGCGTAGTTTGCCAGAAGAAGTTCTCTCGAAGTTGGAGTCTAAAATTGCACCTTCggacccacaccggggagcagcctttcgagtgcacagtttgcaagaaGAGTTTCAGGAAAAGTGGAGATCTTAGAACGCACCTACGGACCCACACCggagagaagcctttcgagtgcgcaGTTTGTCTGAAGAAGTTTTCAGTGAGTGGGAGTCTGAGAAGGCACCTGCGGATCCACACAAAGGACAAGCCATTCGAATGCACAGTTTGCATGAAGAGTTTCTCTGAGAGTGGGAGTCTGCGAGTGCACCTTcggatccacaccggggagcagcctttcgagtgcacagtttgcaagaaGAGTTTCAGGACAAGTGGAGATCTTAGAACGCACCTACGGACCCACACCggagagaagcctttcgagtgcgcaGTTTGTCTGAAGAAGTTTTCAGTGAGTGGGAGTCTGAGAACGCACCTGCGGATCCACACAAAGGACAAGCCATTCGAATGTACAGTTTGCATGAAGAGTTTCTCTGAGAGTGGGAGTCTGCTAGTGCACCTTcggatccacaccggggagaggcctttcgagtgcacagtttgcaagaaGAGTTTCAGGACAAGTGGAGATCTTAGAAGGCACCTACggacccacaccggggagaagccttacgAGTGCACCGTTTGCAAGAAGAAGTTCACTCAAAGTGGAGGTCTGAAAATGCAccttcgcacccacactgAGGAGAAGCCTTACAAGTGCACCGTTTGTAAGAAGAGTTTCAGTGAATCCGGAAACCTCAGAAGGCATCTCAGAACCCACACCAGgtag
- Protein Sequence
- MALESAQCGEVAAASAAPRAPRGKRGGKQALHCAVCEKEFRFKSVLQAHLRIHTGEKPFECIFCEEKFAQKSHLTTHLRTHTKVKPFECVVCQKKFSRSWSLKLHLRTHTGEQPFECTVCKKSFRKSGDLRTHLRTHTGEKPFECAVCLKKFSVSGSLRRHLRIHTKDKPFECTVCMKSFSESGSLRVHLRIHTGEQPFECTVCKKSFRTSGDLRTHLRTHTGEKPFECAVCLKKFSVSGSLRTHLRIHTKDKPFECTVCMKSFSESGSLLVHLRIHTGERPFECTVCKKSFRTSGDLRRHLRTHTGEKPYECTVCKKKFTQSGGLKMHLRTHTEEKPYKCTVCKKSFSESGNLRRHLRTHTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435194; iTF_01435230;
- 90% Identity
- iTF_01435194; iTF_01435230;
- 80% Identity
- iTF_01435194; iTF_01435230;