Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.79 3.4e+02 1.0 0.4 16 39 30 50 27 54 0.74

2 12 0.00017 0.073 12.8 1.3 7 38 50 81 44 85 0.83

3 12 0.019 8.1 6.2 0.5 18 41 88 108 82 110 0.79

4 12 0.61 2.6e+02 1.4 2.5 14 41 112 136 103 138 0.77

5 12 0.096 41 4.0 1.5 16 40 142 163 133 167 0.82

6 12 0.0099 4.2 7.1 0.9 6 39 161 190 160 194 0.76

7 12 0.22 93 2.8 1.2 14 41 196 220 188 222 0.75

8 12 0.21 88 2.9 0.4 17 40 227 247 222 251 0.80

9 12 0.016 7 6.4 0.6 7 30 246 268 244 278 0.77

10 12 0.16 66 3.3 1.6 18 41 284 304 273 306 0.82

11 12 0.041 18 5.1 3.5 14 41 308 332 300 334 0.81

12 12 0.0006 0.25 11.0 3.1 13 41 335 360 329 361 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.79	3.4e+02	1.0	0.4	16	39	30	50	27	54	0.74
2	12	0.00017	0.073	12.8	1.3	7	38	50	81	44	85	0.83
3	12	0.019	8.1	6.2	0.5	18	41	88	108	82	110	0.79
4	12	0.61	2.6e+02	1.4	2.5	14	41	112	136	103	138	0.77
5	12	0.096	41	4.0	1.5	16	40	142	163	133	167	0.82
6	12	0.0099	4.2	7.1	0.9	6	39	161	190	160	194	0.76
7	12	0.22	93	2.8	1.2	14	41	196	220	188	222	0.75
8	12	0.21	88	2.9	0.4	17	40	227	247	222	251	0.80
9	12	0.016	7	6.4	0.6	7	30	246	268	244	278	0.77
10	12	0.16	66	3.3	1.6	18	41	284	304	273	306	0.82
11	12	0.041	18	5.1	3.5	14	41	308	332	300	334	0.81
12	12	0.0006	0.25	11.0	3.1	13	41	335	360	329	361	0.84

Coding Sequence: ATGGCCCTTGAGAGTGCACAgtgcggcgaggtggcggcagcgtcagcggcgccgcgtgctccACGGGGAAAGCGTGGAGGGAAGCAGGCGCTCCACTGTGCAGTCTGCGAGAAGGAGTTCCGATTCAAGAGTGTTCTCCAGGCGCACTTGcggatccacaccggggagaagcctttcgagtgcattTTCTGCGAGGAGAAGTTTGCTCAAAAGAGTCACCTAACAACGCACCTTCGCACCCACACCAAGGTGAAGCCGTTTGAGTGCGTAGTTTGCCAGAAGAAGTTCTCTCGAAGTTGGAGTCTAAAATTGCACCTTCggacccacaccggggagcagcctttcgagtgcacagtttgcaagaaGAGTTTCAGGAAAAGTGGAGATCTTAGAACGCACCTACGGACCCACACCggagagaagcctttcgagtgcgcaGTTTGTCTGAAGAAGTTTTCAGTGAGTGGGAGTCTGAGAAGGCACCTGCGGATCCACACAAAGGACAAGCCATTCGAATGCACAGTTTGCATGAAGAGTTTCTCTGAGAGTGGGAGTCTGCGAGTGCACCTTcggatccacaccggggagcagcctttcgagtgcacagtttgcaagaaGAGTTTCAGGACAAGTGGAGATCTTAGAACGCACCTACGGACCCACACCggagagaagcctttcgagtgcgcaGTTTGTCTGAAGAAGTTTTCAGTGAGTGGGAGTCTGAGAACGCACCTGCGGATCCACACAAAGGACAAGCCATTCGAATGTACAGTTTGCATGAAGAGTTTCTCTGAGAGTGGGAGTCTGCTAGTGCACCTTcggatccacaccggggagaggcctttcgagtgcacagtttgcaagaaGAGTTTCAGGACAAGTGGAGATCTTAGAAGGCACCTACggacccacaccggggagaagccttacgAGTGCACCGTTTGCAAGAAGAAGTTCACTCAAAGTGGAGGTCTGAAAATGCAccttcgcacccacactgAGGAGAAGCCTTACAAGTGCACCGTTTGTAAGAAGAGTTTCAGTGAATCCGGAAACCTCAGAAGGCATCTCAGAACCCACACCAGgtag
Protein Sequence: MALESAQCGEVAAASAAPRAPRGKRGGKQALHCAVCEKEFRFKSVLQAHLRIHTGEKPFECIFCEEKFAQKSHLTTHLRTHTKVKPFECVVCQKKFSRSWSLKLHLRTHTGEQPFECTVCKKSFRKSGDLRTHLRTHTGEKPFECAVCLKKFSVSGSLRRHLRIHTKDKPFECTVCMKSFSESGSLRVHLRIHTGEQPFECTVCKKSFRTSGDLRTHLRTHTGEKPFECAVCLKKFSVSGSLRTHLRIHTKDKPFECTVCMKSFSESGSLLVHLRIHTGERPFECTVCKKSFRTSGDLRRHLRTHTGEKPYECTVCKKKFTQSGGLKMHLRTHTEEKPYKCTVCKKSFSESGNLRRHLRTHTR

Sequence clustering based on sequence similarity using MMseqs2