Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:9168137-9174126[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0095 1.7 8.5 0.1 20 45 20 45 17 53 0.89

2 20 0.22 41 4.1 0.0 22 47 77 102 74 107 0.83

3 20 0.19 34 4.3 0.0 21 46 104 129 100 135 0.89

4 20 0.11 20 5.1 0.0 22 47 133 158 130 164 0.83

5 20 0.26 47 3.9 0.0 21 45 160 184 156 187 0.89

6 20 0.0083 1.5 8.7 0.0 21 46 188 213 184 219 0.86

7 20 0.0019 0.35 10.7 0.1 21 46 216 241 212 247 0.90

8 20 0.016 3 7.7 0.0 22 47 245 270 242 275 0.83

9 20 0.0029 0.52 10.1 0.1 21 47 272 298 270 304 0.86

10 20 3.4 6.2e+02 0.3 0.3 21 43 300 322 296 326 0.79

11 20 0.035 6.3 6.7 0.3 12 49 319 356 309 359 0.78

12 20 0.31 57 3.6 0.0 21 46 356 381 352 387 0.89

13 20 4.8 8.8e+02 -0.2 0.0 26 44 389 407 384 411 0.88

14 20 0.07 13 5.7 0.0 18 46 408 437 400 444 0.79

15 20 3.2 5.8e+02 0.4 0.4 21 43 440 462 432 466 0.79

16 20 0.0082 1.5 8.7 0.2 12 47 459 494 449 501 0.79

17 20 3.1 5.7e+02 0.4 0.2 21 43 496 518 491 522 0.80

18 20 0.0014 0.25 11.2 0.5 12 46 515 549 505 556 0.81

19 20 0.63 1.2e+02 2.6 0.0 22 49 553 580 550 583 0.83

20 20 0.0042 0.77 9.6 0.1 21 45 580 604 578 613 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0095	1.7	8.5	0.1	20	45	20	45	17	53	0.89
2	20	0.22	41	4.1	0.0	22	47	77	102	74	107	0.83
3	20	0.19	34	4.3	0.0	21	46	104	129	100	135	0.89
4	20	0.11	20	5.1	0.0	22	47	133	158	130	164	0.83
5	20	0.26	47	3.9	0.0	21	45	160	184	156	187	0.89
6	20	0.0083	1.5	8.7	0.0	21	46	188	213	184	219	0.86
7	20	0.0019	0.35	10.7	0.1	21	46	216	241	212	247	0.90
8	20	0.016	3	7.7	0.0	22	47	245	270	242	275	0.83
9	20	0.0029	0.52	10.1	0.1	21	47	272	298	270	304	0.86
10	20	3.4	6.2e+02	0.3	0.3	21	43	300	322	296	326	0.79
11	20	0.035	6.3	6.7	0.3	12	49	319	356	309	359	0.78
12	20	0.31	57	3.6	0.0	21	46	356	381	352	387	0.89
13	20	4.8	8.8e+02	-0.2	0.0	26	44	389	407	384	411	0.88
14	20	0.07	13	5.7	0.0	18	46	408	437	400	444	0.79
15	20	3.2	5.8e+02	0.4	0.4	21	43	440	462	432	466	0.79
16	20	0.0082	1.5	8.7	0.2	12	47	459	494	449	501	0.79
17	20	3.1	5.7e+02	0.4	0.2	21	43	496	518	491	522	0.80
18	20	0.0014	0.25	11.2	0.5	12	46	515	549	505	556	0.81
19	20	0.63	1.2e+02	2.6	0.0	22	49	553	580	550	583	0.83
20	20	0.0042	0.77	9.6	0.1	21	45	580	604	578	613	0.88

Sequence Information

Coding Sequence: ATGGCTTCGAGTGATGGACTCGTCGATGTCCGAGGAAATGTTCAAGAAGTTGAGTATCAGATCAAGGATCCTCTCGAATGCAAAGTGTGTGGTATGACATTCAATGAAAAAAGACATCTAAGACGCCATCTTCGATACCATTCGGAGCAGAAGCGTTCTGCGTGTACTATTTCCAAAAAAGCAATTTGTAAAGCCAGTCTTAAGACACATCTTCTGATCCATACTGGCGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCAACTCAAGTACTCTCAGGACGCATCTTCAAACCCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAAATGTTTGGCAGAACTTCTGACCTCAAAACACATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCCACTCAAGTACTCTCAAGAGGCATCTTCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACGTTTGGCCACTTAAGTACTCTCAAGAGGCATCTTCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACGTTTGGCCACTCAAGTACTCTCAAGAGGCATCTCCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAGCTTCTTCTCTCAAGACGCATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCCACTCAAGAACTCTCACGAGGCATCTTCAAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAGCTGCTCATCTCAAAACACATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTCCATCGACGAAGTCATACCggtgagaagccttttgaatGCAAAATTTGCAACAAGAGGTTTGGCCACTCAAGTACTCTCAAGACGCATCTTCAAACCCATACTGctgagaagccttttgaatGTTTGATTTGCAACAAAATGTTTGGCAGAACTTCTGACCTCAAAACACATCTTCGAATCCATGCTGGTGACAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTTGCCAAGCTGGTTATCTCAAGGAACATCTTCGAAGCCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAAATGTTTGGCAGAACTTCTGAGCTCAAAACACATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTGCATCGACGAAGTCATACCggtgagaagccttttggATGCTCGATTTGCAACAAGACGTTTGGCATCTCAAGTACTCTCAGGACGCATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTGCATCGACGAAGTCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAATTGCTCATCTCAAGACGCATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTCGCCTAGCTGGTCATCTCAAGACGCATCTTCGAATCCATACTggtgagaagccttttgaatGTTCGATTTGCAAGAAGACTTTTCGCCAAGCTGCTCATCTCAAGACACATCTTCGAACCTATTCTGATGAGAAGCCTTACGAGTGTGTAGTTTGCAATAAGAAGTTCACACATGTACATCTTTTAAAAATCCATGGCCGAAGTCATACCGTGGAAAAGCCTTTCAGGTGCACAGAGTGCGGTAAATCGTTCAGTCAGCGGAATTCTCTGATGGCACATCTTTATACTTATTTACAGGAATAA
Protein Sequence: MASSDGLVDVRGNVQEVEYQIKDPLECKVCGMTFNEKRHLRRHLRYHSEQKRSACTISKKAICKASLKTHLLIHTGEKSFECTICNKTFGNSSTLRTHLQTHTGEKPFECSICNKMFGRTSDLKTHLRIHTGEKSFECTICNKTFGHSSTLKRHLRTHTGEKPFECSICNKTFGHLSTLKRHLRTHTGEKPFECSICNKTFGHSSTLKRHLRTHTGEKPFECSICNKTFRQASSLKTHLRIHTGEKSFECTICNKTFGHSRTLTRHLQTHTGEKPFECSICNKTFRQAAHLKTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFECKICNKRFGHSSTLKTHLQTHTAEKPFECLICNKMFGRTSDLKTHLRIHAGDKSFECTICNKTFCQAGYLKEHLRSHTGEKPFECSICNKMFGRTSELKTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFGCSICNKTFGISSTLRTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFECSICNKTFRQIAHLKTHLRIHTGEKSFECTICNKTFRLAGHLKTHLRIHTGEKPFECSICKKTFRQAAHLKTHLRTYSDEKPYECVVCNKKFTHVHLLKIHGRSHTVEKPFRCTECGKSFSQRNSLMAHLYTYLQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435203;
90% Identity: iTF_01435203;
80% Identity: iTF_01435203;