Tpal011410.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:9168137-9174126[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 9.3e-06 0.0003 20.8 2.9 2 23 26 47 25 47 0.97
2 22 3.3e-07 1e-05 25.3 1.5 1 23 80 102 80 102 0.98
3 22 7.7e-07 2.4e-05 24.2 0.8 1 23 108 130 108 130 0.98
4 22 1.8e-07 5.8e-06 26.1 4.0 1 23 136 158 136 158 0.99
5 22 4.3e-07 1.4e-05 25.0 3.5 1 23 164 186 164 186 0.99
6 22 1.9e-07 6.1e-06 26.1 3.8 1 23 192 214 192 214 0.99
7 22 3.9e-08 1.2e-06 28.2 1.2 1 23 220 242 220 242 0.98
8 22 2.5e-06 7.9e-05 22.6 3.7 1 23 248 270 248 270 0.98
9 22 7.5e-08 2.4e-06 27.4 2.9 1 23 276 298 276 298 0.99
10 22 3.8e-05 0.0012 18.8 7.3 1 23 304 326 304 326 0.99
11 22 2.8e-06 8.8e-05 22.4 4.0 1 23 332 354 332 354 0.98
12 22 2.6e-06 8.2e-05 22.5 0.7 1 23 360 382 360 382 0.98
13 22 9.7e-07 3.1e-05 23.9 2.6 1 23 388 410 388 410 0.98
14 22 4.5e-07 1.4e-05 24.9 1.3 1 23 416 438 416 438 0.99
15 22 3.8e-05 0.0012 18.8 7.3 1 23 444 466 444 466 0.99
16 22 2.6e-05 0.00084 19.3 1.0 3 23 474 494 472 494 0.98
17 22 3.8e-05 0.0012 18.8 7.3 1 23 500 522 500 522 0.99
18 22 7.3e-07 2.3e-05 24.2 2.3 1 23 528 550 528 550 0.98
19 22 1.1e-06 3.4e-05 23.7 2.0 1 23 556 578 556 578 0.98
20 22 9.7e-07 3.1e-05 23.9 1.5 1 22 584 605 584 605 0.97
21 22 0.00032 0.01 15.9 3.4 1 23 612 634 612 634 0.98
22 22 1.7e-06 5.4e-05 23.1 0.5 1 21 640 660 640 661 0.94

Sequence Information

Coding Sequence
ATGGCTTCGAGTGATGGACTCGTCGATGTCCGAGGAAATGTTCAAGAAGTTGAGTATCAGATCAAGGATCCTCTCGAATGCAAAGTGTGTGGTATGACATTCAATGAAAAAAGACATCTAAGACGCCATCTTCGATACCATTCGGAGCAGAAGCGTTCTGCGTGTACTATTTCCAAAAAAGCAATTTGTAAAGCCAGTCTTAAGACACATCTTCTGATCCATACTGGCGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCAACTCAAGTACTCTCAGGACGCATCTTCAAACCCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAAATGTTTGGCAGAACTTCTGACCTCAAAACACATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCCACTCAAGTACTCTCAAGAGGCATCTTCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACGTTTGGCCACTTAAGTACTCTCAAGAGGCATCTTCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACGTTTGGCCACTCAAGTACTCTCAAGAGGCATCTCCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAGCTTCTTCTCTCAAGACGCATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCCACTCAAGAACTCTCACGAGGCATCTTCAAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAGCTGCTCATCTCAAAACACATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTCCATCGACGAAGTCATACCggtgagaagccttttgaatGCAAAATTTGCAACAAGAGGTTTGGCCACTCAAGTACTCTCAAGACGCATCTTCAAACCCATACTGctgagaagccttttgaatGTTTGATTTGCAACAAAATGTTTGGCAGAACTTCTGACCTCAAAACACATCTTCGAATCCATGCTGGTGACAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTTGCCAAGCTGGTTATCTCAAGGAACATCTTCGAAGCCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAAATGTTTGGCAGAACTTCTGAGCTCAAAACACATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTGCATCGACGAAGTCATACCggtgagaagccttttggATGCTCGATTTGCAACAAGACGTTTGGCATCTCAAGTACTCTCAGGACGCATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTGCATCGACGAAGTCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAATTGCTCATCTCAAGACGCATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTCGCCTAGCTGGTCATCTCAAGACGCATCTTCGAATCCATACTggtgagaagccttttgaatGTTCGATTTGCAAGAAGACTTTTCGCCAAGCTGCTCATCTCAAGACACATCTTCGAACCTATTCTGATGAGAAGCCTTACGAGTGTGTAGTTTGCAATAAGAAGTTCACACATGTACATCTTTTAAAAATCCATGGCCGAAGTCATACCGTGGAAAAGCCTTTCAGGTGCACAGAGTGCGGTAAATCGTTCAGTCAGCGGAATTCTCTGATGGCACATCTTTATACTTATTTACAGGAATAA
Protein Sequence
MASSDGLVDVRGNVQEVEYQIKDPLECKVCGMTFNEKRHLRRHLRYHSEQKRSACTISKKAICKASLKTHLLIHTGEKSFECTICNKTFGNSSTLRTHLQTHTGEKPFECSICNKMFGRTSDLKTHLRIHTGEKSFECTICNKTFGHSSTLKRHLRTHTGEKPFECSICNKTFGHLSTLKRHLRTHTGEKPFECSICNKTFGHSSTLKRHLRTHTGEKPFECSICNKTFRQASSLKTHLRIHTGEKSFECTICNKTFGHSRTLTRHLQTHTGEKPFECSICNKTFRQAAHLKTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFECKICNKRFGHSSTLKTHLQTHTAEKPFECLICNKMFGRTSDLKTHLRIHAGDKSFECTICNKTFCQAGYLKEHLRSHTGEKPFECSICNKMFGRTSELKTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFGCSICNKTFGISSTLRTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFECSICNKTFRQIAHLKTHLRIHTGEKSFECTICNKTFRLAGHLKTHLRIHTGEKPFECSICKKTFRQAAHLKTHLRTYSDEKPYECVVCNKKFTHVHLLKIHGRSHTVEKPFRCTECGKSFSQRNSLMAHLYTYLQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01435654; iTF_01435185;
90% Identity
iTF_01435654; iTF_01435185;
80% Identity
iTF_01435654; iTF_01435185;