Tpal006668.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:1281419-1287026[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.52 95 2.9 0.4 13 44 19 50 7 59 0.73 2 14 0.0066 1.2 9.0 0.0 23 46 57 80 51 86 0.86 3 14 0.0097 1.8 8.4 0.0 21 46 83 108 79 114 0.86 4 14 0.0012 0.22 11.4 0.0 21 46 111 136 107 142 0.86 5 14 0.089 16 5.3 0.0 21 45 139 163 135 166 0.91 6 14 0.0012 0.22 11.4 0.0 21 46 167 192 163 198 0.86 7 14 0.054 9.9 6.0 0.0 21 46 195 220 191 226 0.86 8 14 0.019 3.4 7.5 0.0 21 45 223 247 219 251 0.90 9 14 0.02 3.6 7.4 0.4 21 46 251 276 247 282 0.86 10 14 0.028 5 7.0 0.0 21 45 279 303 275 310 0.87 11 14 0.028 5 7.0 0.0 21 47 307 333 303 339 0.83 12 14 0.44 80 3.1 0.1 21 45 335 359 331 362 0.89 13 14 0.0054 0.99 9.3 0.1 11 45 352 387 344 391 0.79 14 14 0.13 23 4.9 0.1 21 45 391 415 387 422 0.86
Sequence Information
- Coding Sequence
- ATGTCCCGCGAGCGTGAGCCCCGTCACCGCACGGCTGGATCGTCAGCGTCCGTGCGTGCTCCACGCGGTGCCTGCAATGGAGAGAAGCGTCTGGAGTGCCCAGTGTGCGAGAAGCAGTTCGCCTTTAGAAGTCAACTAGAAACGCACCTTCGGACCCACACCGGGgggaagcctttcgagtgcccAGTTTGCAGGAAGAAGTTCAATCAAAGTGGAGATCTTACAAAGCACCTGcgcacccacaccggggagaagcctttcgagtgcacagtttgcaagaaGAAGTTCAATCAAAGTGGATATCTCAGAACGCAccttcgcacccacaccggggagaagcctttcgagtgcccAGTTTGCAGGAAGAAGTTCAATCAAAGTGGAGATCTTACAAAGCACCTGcgcacccacaccggggagaagcctttcgagtgcacagtgtgccagaagaagTTCAATGAAAGTGGAAGTCTCAGAACGCAccttcgcacccacaccggggagaagcctttcgagtgcccAGTTTGCAGGAAGAAGTTCAATCAAAGTGGAGATCTTACAAAGCACCTGcgcacccacaccggggagaagcctttcgagtgcacagtgtgccagaagaagTTCAATGAAAGTGGAAGTCTCAGAACGCAccttcgcacccacaccggggagaagcctttcgagtgcccAGTTTGCAAGAGGAAGTTCTCTGTAAGTGGTACTCTCAGAACACAccttcgcacccacaccggggagaagccttttgagtgcacagtttgcaggCAGAAGTGCACTCACAGTGCAGATCTCCGAAAGCACCTTCGCACCcacacaggggagaagcctttcgagtgcacagtttgccaGAAGAAGTTCACTGAAAGTGGAAGTCTCAGAAAGCACCTTCGctcccacaccggggagaagcctttcgagtgctcGGTTTGCAAAATGAAGTTCACTAAAAGTGGAAGTCTCAGAACGCACCTTCGCACCCACACcagggagaagcctttcgagtgcgcaGTTTGCAAGAGGAAGTTCTCTGTAAGTGGTACTCTCAGAGCACAccttcgcacccacaccggggagaagccttttgagtgcacagtttgcaacaagaagttcaatCAAAGTGGGTATCTCAGAACGCAccttcgcacccacaccggggagaggcctttcgagtgcacagtttgcaggCAAAAGTTCACTCTAAGTGGACATCTCAGAAAGCACCTTCTTACCCACACCgaggagaagcctttcgagtgcacagtttga
- Protein Sequence
- MSREREPRHRTAGSSASVRAPRGACNGEKRLECPVCEKQFAFRSQLETHLRTHTGGKPFECPVCRKKFNQSGDLTKHLRTHTGEKPFECTVCKKKFNQSGYLRTHLRTHTGEKPFECPVCRKKFNQSGDLTKHLRTHTGEKPFECTVCQKKFNESGSLRTHLRTHTGEKPFECPVCRKKFNQSGDLTKHLRTHTGEKPFECTVCQKKFNESGSLRTHLRTHTGEKPFECPVCKRKFSVSGTLRTHLRTHTGEKPFECTVCRQKCTHSADLRKHLRTHTGEKPFECTVCQKKFTESGSLRKHLRSHTGEKPFECSVCKMKFTKSGSLRTHLRTHTREKPFECAVCKRKFSVSGTLRAHLRTHTGEKPFECTVCNKKFNQSGYLRTHLRTHTGERPFECTVCRQKFTLSGHLRKHLLTHTEEKPFECTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435218; iTF_01435743;
- 90% Identity
- iTF_01435218; iTF_01435743;
- 80% Identity
- iTF_01435218; iTF_01435743;