Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:9168137-9174126[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.13 57 3.5 1.7 18 40 26 45 19 56 0.81

2 21 0.0001 0.043 13.5 1.6 6 41 70 101 65 103 0.83

3 21 0.0052 2.2 8.0 0.7 17 40 108 128 102 131 0.90

4 21 0.00031 0.13 11.9 3.3 14 41 133 157 128 159 0.87

5 21 0.01 4.4 7.1 3.0 17 41 164 185 158 187 0.87

6 21 0.00098 0.42 10.3 2.8 17 41 192 213 186 215 0.88

7 21 0.041 18 5.1 2.0 17 40 220 240 212 243 0.85

8 21 0.0033 1.4 8.7 4.6 3 41 235 269 233 270 0.85

9 21 0.16 69 3.3 2.2 17 41 276 297 270 299 0.77

10 21 1.3 5.7e+02 0.3 6.4 14 29 301 316 291 327 0.76

11 21 0.0044 1.9 8.3 2.7 15 41 330 353 321 355 0.84

12 21 0.0024 1 9.1 0.6 16 40 359 380 353 383 0.88

13 21 0.52 2.2e+02 1.6 2.8 14 28 385 399 380 411 0.74

14 21 0.0014 0.61 9.8 1.8 13 41 412 437 402 439 0.83

15 21 2.6 1.1e+03 -0.6 11.0 18 41 473 493 438 495 0.84

16 21 0.33 1.4e+02 2.3 3.6 17 29 500 512 494 523 0.79

17 21 0.16 66 3.3 2.0 15 40 526 548 518 550 0.80

18 21 0.17 73 3.2 3.9 5 27 545 566 541 578 0.75

19 21 0.19 80 3.0 2.7 6 41 574 605 570 606 0.75

20 21 1.8 7.7e+02 -0.1 2.7 11 27 607 622 597 634 0.78

21 21 0.056 24 4.7 0.4 14 41 637 661 623 662 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.13	57	3.5	1.7	18	40	26	45	19	56	0.81
2	21	0.0001	0.043	13.5	1.6	6	41	70	101	65	103	0.83
3	21	0.0052	2.2	8.0	0.7	17	40	108	128	102	131	0.90
4	21	0.00031	0.13	11.9	3.3	14	41	133	157	128	159	0.87
5	21	0.01	4.4	7.1	3.0	17	41	164	185	158	187	0.87
6	21	0.00098	0.42	10.3	2.8	17	41	192	213	186	215	0.88
7	21	0.041	18	5.1	2.0	17	40	220	240	212	243	0.85
8	21	0.0033	1.4	8.7	4.6	3	41	235	269	233	270	0.85
9	21	0.16	69	3.3	2.2	17	41	276	297	270	299	0.77
10	21	1.3	5.7e+02	0.3	6.4	14	29	301	316	291	327	0.76
11	21	0.0044	1.9	8.3	2.7	15	41	330	353	321	355	0.84
12	21	0.0024	1	9.1	0.6	16	40	359	380	353	383	0.88
13	21	0.52	2.2e+02	1.6	2.8	14	28	385	399	380	411	0.74
14	21	0.0014	0.61	9.8	1.8	13	41	412	437	402	439	0.83
15	21	2.6	1.1e+03	-0.6	11.0	18	41	473	493	438	495	0.84
16	21	0.33	1.4e+02	2.3	3.6	17	29	500	512	494	523	0.79
17	21	0.16	66	3.3	2.0	15	40	526	548	518	550	0.80
18	21	0.17	73	3.2	3.9	5	27	545	566	541	578	0.75
19	21	0.19	80	3.0	2.7	6	41	574	605	570	606	0.75
20	21	1.8	7.7e+02	-0.1	2.7	11	27	607	622	597	634	0.78
21	21	0.056	24	4.7	0.4	14	41	637	661	623	662	0.83

Sequence Information

Coding Sequence: ATGGCTTCGAGTGATGGACTCGTCGATGTCCGAGGAAATGTTCAAGAAGTTGAGTATCAGATCAAGGATCCTCTCGAATGCAAAGTGTGTGGTATGACATTCAATGAAAAAAGACATCTAAGACGCCATCTTCGATACCATTCGGAGCAGAAGCGTTCTGCGTGTACTATTTCCAAAAAAGCAATTTGTAAAGCCAGTCTTAAGACACATCTTCTGATCCATACTGGCGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCAACTCAAGTACTCTCAGGACGCATCTTCAAACCCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAAATGTTTGGCAGAACTTCTGACCTCAAAACACATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCCACTCAAGTACTCTCAAGAGGCATCTTCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACGTTTGGCCACTTAAGTACTCTCAAGAGGCATCTTCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACGTTTGGCCACTCAAGTACTCTCAAGAGGCATCTCCGAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAGCTTCTTCTCTCAAGACGCATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTGGCCACTCAAGAACTCTCACGAGGCATCTTCAAACCCACACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAGCTGCTCATCTCAAAACACATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTCCATCGACGAAGTCATACCggtgagaagccttttgaatGCAAAATTTGCAACAAGAGGTTTGGCCACTCAAGTACTCTCAAGACGCATCTTCAAACCCATACTGctgagaagccttttgaatGTTTGATTTGCAACAAAATGTTTGGCAGAACTTCTGACCTCAAAACACATCTTCGAATCCATGCTGGTGACAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTTGCCAAGCTGGTTATCTCAAGGAACATCTTCGAAGCCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAAATGTTTGGCAGAACTTCTGAGCTCAAAACACATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTGCATCGACGAAGTCATACCggtgagaagccttttggATGCTCGATTTGCAACAAGACGTTTGGCATCTCAAGTACTCTCAGGACGCATCTTCGAACCCATACTGGTGAGAAGCCTTTTAAATGCTCAATTTGTAAGAAGACGTTTAGCCACTCTTGTACTCTCGAGGTGCATCGACGAAGTCATACTggtgagaagccttttgaatGCTCGATTTGCAACAAGACTTTTCGCCAAATTGCTCATCTCAAGACGCATCTTCGAATCCATACTGGTGAGAAGTCTTTTGAATGCACAATTTGCAACAAGACGTTTCGCCTAGCTGGTCATCTCAAGACGCATCTTCGAATCCATACTggtgagaagccttttgaatGTTCGATTTGCAAGAAGACTTTTCGCCAAGCTGCTCATCTCAAGACACATCTTCGAACCTATTCTGATGAGAAGCCTTACGAGTGTGTAGTTTGCAATAAGAAGTTCACACATGTACATCTTTTAAAAATCCATGGCCGAAGTCATACCGTGGAAAAGCCTTTCAGGTGCACAGAGTGCGGTAAATCGTTCAGTCAGCGGAATTCTCTGATGGCACATCTTTATACTTATTTACAGGAATAA
Protein Sequence: MASSDGLVDVRGNVQEVEYQIKDPLECKVCGMTFNEKRHLRRHLRYHSEQKRSACTISKKAICKASLKTHLLIHTGEKSFECTICNKTFGNSSTLRTHLQTHTGEKPFECSICNKMFGRTSDLKTHLRIHTGEKSFECTICNKTFGHSSTLKRHLRTHTGEKPFECSICNKTFGHLSTLKRHLRTHTGEKPFECSICNKTFGHSSTLKRHLRTHTGEKPFECSICNKTFRQASSLKTHLRIHTGEKSFECTICNKTFGHSRTLTRHLQTHTGEKPFECSICNKTFRQAAHLKTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFECKICNKRFGHSSTLKTHLQTHTAEKPFECLICNKMFGRTSDLKTHLRIHAGDKSFECTICNKTFCQAGYLKEHLRSHTGEKPFECSICNKMFGRTSELKTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFGCSICNKTFGISSTLRTHLRTHTGEKPFKCSICKKTFSHSCTLEVHRRSHTGEKPFECSICNKTFRQIAHLKTHLRIHTGEKSFECTICNKTFRLAGHLKTHLRIHTGEKPFECSICKKTFRQAAHLKTHLRTYSDEKPYECVVCNKKFTHVHLLKIHGRSHTVEKPFRCTECGKSFSQRNSLMAHLYTYLQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01435203;
90% Identity: iTF_01435203;
80% Identity: iTF_01435203;