Tpal006118.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- MBD2
- Assembly
- GCA_012932325.1
- Location
- NW:21298002-21301857[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-26 5.7e-23 80.0 0.1 2 72 4 69 3 73 0.94 2 2 0.0011 2.5 7.5 0.1 18 70 78 145 76 152 0.70
Sequence Information
- Coding Sequence
- ATGTCTgtagaaaagaaaaagtttgACTGTACAGCTTTGCCGAAAGGATGGCAAAGAGAAGAAATTATTCGGAAGTCTGGCTTGTCAGCGGGGAAAGTGGATATCTATTATTACAGTCCATCGGGCCATCGATTCCGCAGCAAACCTCAACTGGCACGTTATCTGGGAGAGACTGTCGATCTCTCATCATTTGATTTTAGAACTGGTAATATCAATAACAATGCCTTAAGGAAAACCAAACAGAGGCCAAGAGGGATACAATTCGATTACAGTCGCGGTGTTCGGACGGATGCTTCACTTGTTCCACCAATAAGACAGACTGCATCCATCTTCAAACAGCCAGTAACAGTGCACAAAACTCAAGAAGGAAAAGTTAAATCAGACTTCAAACAAGGACCTCAAAGCCAAGACAAGCCCAAGCAGCTTTTCTGGGAGAAGCGATTGGAAGGACTCAGGGCATGTGATATTGATGGGTTGGAGTTGGATGCAATGGAGTTACCCAAGGGTCTGAAACCTGTTGGACCTCATGTAGGTGATGAAACTTTACTACAATCTGTGGCCACTGCTCTTCATGTGTCTGCTCAACCAGTTACTGGTCAGACTGGTAGCCGCTCTGCCCTTGATAGAAACCCAGGCGTCTTTCTAAATCCAGATCAACCACTCGTTCAGGCTGTTCAAGTAATAGATGACGACATCAAGCGGCAAGAAGATCGAGTCTTATCAGCAAGAAAGAAATTACAAGATGCACTTAAAGTATAG
- Protein Sequence
- MSVEKKKFDCTALPKGWQREEIIRKSGLSAGKVDIYYYSPSGHRFRSKPQLARYLGETVDLSSFDFRTGNINNNALRKTKQRPRGIQFDYSRGVRTDASLVPPIRQTASIFKQPVTVHKTQEGKVKSDFKQGPQSQDKPKQLFWEKRLEGLRACDIDGLELDAMELPKGLKPVGPHVGDETLLQSVATALHVSAQPVTGQTGSRSALDRNPGVFLNPDQPLVQAVQVIDDDIKRQEDRVLSARKKLQDALKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731497;
- 90% Identity
- iTF_00731497;
- 80% Identity
- -