Ttri030558.1
Basic Information
- Insect
- Therioaphis trifolii
- Gene Symbol
- egg_2
- Assembly
- GCA_027580255.1
- Location
- CM050404.1:6206489-6212695[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1 2.4e+04 -3.7 0.1 10 23 67 80 65 83 0.80 2 2 5.6e-13 6.5e-09 36.6 0.0 3 71 560 622 558 627 0.91
Sequence Information
- Coding Sequence
- ATGGCATCAGAAGATTTTCCTCACGTAGACCTTACTGAGAGACAGTCCAAACAACTAAAATGTATAAACAGACTTTGTAATCATGGAGATGATCTAAGAGAAGCTATTGAACTAACATGTAATTACTATAATGTTGATTACAAACGAGGCAAAGAGGTTTGTACTCGTTGTTTTGATGAGTGTATATCACATTATAAACGCCTTGAAAAAAAATGGGATCGCAGAGAATGTATTTTGAAAACCAATTTTCCAAATTTTATATCACACCATGTTATAGAATCATCCTCATCATCAGAAGACGAAGAAGAATCAAGGTCTAGTATTTCTAAAAATGTATCTGATGATGAAATTACATTCCTTATGAATAATTTGACTGATGCGTGGTTTCATGAAAACAAAAGTATGATAAGCGAACACGTTGCAATGTGTGATGATTATATAAAAAATTTACAAGAAAGTTGTCTTGATAATATGAATGTATTAAATGAACTGGTTCGTACTGTAGATCATAAAATTGATAGATTAACAGCTCAGCTGTATGAGCCATATATACCAATATTTAAATATTTACCACCTGTAGATTTGACAGAGTCAAATTTTAAAAAAGACGTTGGGAATATGAGTGATAAGCATTATAAAAAGATTAAATCAGATGACAATAATGAAGAAGAAGATTTTAAAAATAAATTAACTAGTGAAAAAGTTGAACCTTCACCTGCTGATTTACCTGTAATTGGTCATCAAGAGTATCCTCCTTTAAAAGATGGAGAAATAATATATGGTATGCTGTCAAGTTCACCACAAATATGGATTAAATGTAAATTAATGTCAGTGATTACTAAAGAGAATGTGCATGTTAAGATTCAAAATACTGATAAATTATTGACCACTAAAGAAATCGCTTATTATACTCAGAATCTAGTGCAATTTAAAGTCGGTTCCAGAGTGATTGCCAAGTGCAATAAAACTAATAATGGTTCAACTTCTAACTTTTTCTATGCTGGTGTAATTGGTGAACCTCCCAAAGTAATCAATAAATTCAGGTATTTGATTTTTTTCGATGATGGTTGTGTTGAATATCGGCCTCATAAAGATATTCGTTTGATTGTACATGCAACTTTTAAAGAAGTTTGGAATGATGTGTGCCCTAAATTGAAAGATTTTTTAAAAAATTATTTGGAAAATTATCCTGACCGTCAAATGGTAAAGTTGACCGAACAAGACTCTATACGAGCTCAATTTGAAGACTGCTGGGTAGTAGCAAAAGTGATAAAAGTAGATGCATCTCTTGTCAAACTGTATTTTACTGAGTATAAAAAGTATGAATGGCTCTATCGTGGATCTCCAAGGTTATATAAAATGTATGAAAAACAGAGCAAGTCTGAAAAAGGTATACGTTTAAGGCAATCAGGACTTGCTTATTTAAATAAACCAATTATCGAATACAGTAGCGTTGAAGAATCTGAATCTAAATGTGTAGCTCTTAAAAGTTCTACAAAGTGTTCTACTTCATCCCTAAGTGACAAATCTCCACAAAGTAATTCAAATAACGATGAATTATATGAGACAGTTATATTAGAAGTACCTAAAACATGTCCTAGCCCTAAACTGTTTACTGATCATGATTGTGATCCTTCATGTGTAGAATGGACACTGTATGATTACAATAAAACTAAGCGAATGAATATGTTAGCTATACCATTGCATTTTGGTTTTAATAGGACTTTGGTCAAATTTAATAGTACTCAGAAATGTGTTCTTTATGAAACCCCATGTGGTAAACGTATTCAAACCATGCCAGAAATGTTGAAGTACCTTATTGCTACTAAGAGCAAGATGACAATAGACCTATTTGATTTTAATAGCTGGGTTAGACCTCTGGCCGAGTTCAGAGTTTTAAAATCGCAACAATTTTTGAGTGATATATCTTGCGGCAAAGAATTTAAAGGGATAACATGTGTGAATAGTATTAATAATGAAGTACCACCACCAATGTCATATATGACTTCTAGACAAGCAATGCCAGGTGTCAATATAAATGTTGAGAGTGAATTTGTATGTGGATGTGATTGCACAGATGATTGTCAAGACAAATCTAAATGTTCTTGTTGGAAGATGACTATTGATGGTCAACAAATTTTACCTAATCATTACAAAGATCCGTATATTGGTTATAGTTATCGTAGATTACCTGAACGCGTTCTAACAGGTATTTACGAATGCAATAAAACATGTAAATGTTCTAGTTCGTGTTCAAATCGTGTTGTACAATTTCCTTTAAGACAGAAATTACAATTATTTTTAACTGAAAAGAAAGGTTGGGGTGTACGTTGTTTAAATGATATACCTCAGGGATGTTTTATATGCATTTATGTTGGATACTTATTAACTGAAACCGATGCCAATGAAGGTGGTATAAATTATGGTGACGAATATTTGGCCGAGTTAGATTATATTGAAGTTGTTGAAAAAATAAAAGAAGATTATGAAAGTGATGTACCAGCAAGTGAAAAAGAAACAAGCGATGAAATCAGTGTTGGAATTAGGCCTGGAGAGTCTGAATACTCTGATGAAGATTTTCCTGCAACATCTCATGCTAAAAGTGTAACTTCAGACATTTCACAACGGTTTGGTAAACGTAAAGAGCATCAAAATGAGACTAAAGCTGATAAAGATGAAATTATTTCTAAATTTAATGATTCCATTTCTTCAAAACCGATGCGTGAATATTTTGGAGAAAACGAGAGTGTGTATATTATGGATGCAAAGACAAGTGGTAACATTGGGCGTTATTTAAATCATTCATGTAGTCCAAACACATTTGTTCAAAATGTATTTGTGGATACACATGATCTGAGGTTTCCATGGATATCATTTTTTGCACTACATTATATATCAGCTGGATCAGAACTTACCTGGGACTATAATTATGACGTAGGGAGTGTTCCAGGAAAATATATGAAATGTCACTGTGGTTCAACAAATTGTAGAGGAAGATTACTTTAA
- Protein Sequence
- MASEDFPHVDLTERQSKQLKCINRLCNHGDDLREAIELTCNYYNVDYKRGKEVCTRCFDECISHYKRLEKKWDRRECILKTNFPNFISHHVIESSSSSEDEEESRSSISKNVSDDEITFLMNNLTDAWFHENKSMISEHVAMCDDYIKNLQESCLDNMNVLNELVRTVDHKIDRLTAQLYEPYIPIFKYLPPVDLTESNFKKDVGNMSDKHYKKIKSDDNNEEEDFKNKLTSEKVEPSPADLPVIGHQEYPPLKDGEIIYGMLSSSPQIWIKCKLMSVITKENVHVKIQNTDKLLTTKEIAYYTQNLVQFKVGSRVIAKCNKTNNGSTSNFFYAGVIGEPPKVINKFRYLIFFDDGCVEYRPHKDIRLIVHATFKEVWNDVCPKLKDFLKNYLENYPDRQMVKLTEQDSIRAQFEDCWVVAKVIKVDASLVKLYFTEYKKYEWLYRGSPRLYKMYEKQSKSEKGIRLRQSGLAYLNKPIIEYSSVEESESKCVALKSSTKCSTSSLSDKSPQSNSNNDELYETVILEVPKTCPSPKLFTDHDCDPSCVEWTLYDYNKTKRMNMLAIPLHFGFNRTLVKFNSTQKCVLYETPCGKRIQTMPEMLKYLIATKSKMTIDLFDFNSWVRPLAEFRVLKSQQFLSDISCGKEFKGITCVNSINNEVPPPMSYMTSRQAMPGVNINVESEFVCGCDCTDDCQDKSKCSCWKMTIDGQQILPNHYKDPYIGYSYRRLPERVLTGIYECNKTCKCSSSCSNRVVQFPLRQKLQLFLTEKKGWGVRCLNDIPQGCFICIYVGYLLTETDANEGGINYGDEYLAELDYIEVVEKIKEDYESDVPASEKETSDEISVGIRPGESEYSDEDFPATSHAKSVTSDISQRFGKRKEHQNETKADKDEIISKFNDSISSKPMREYFGENESVYIMDAKTSGNIGRYLNHSCSPNTFVQNVFVDTHDLRFPWISFFALHYISAGSELTWDYNYDVGSVPGKYMKCHCGSTNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01433118;
- 90% Identity
- iTF_01433118;
- 80% Identity
- -