Tuni039902.1
Basic Information
- Insect
- Thereva unica
- Gene Symbol
- Aef1
- Assembly
- GCA_949987705.1
- Location
- OX465282.1:113250865-113251296[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.012 3e+02 3.6 0.2 22 46 17 41 12 43 0.87 2 4 4.6e-06 0.12 14.6 0.0 21 52 44 75 42 76 0.89 3 4 0.0017 42 6.4 0.0 21 51 72 102 70 103 0.87 4 4 9.1e-05 2.3 10.4 0.1 21 47 100 126 98 131 0.89
Sequence Information
- Coding Sequence
- ATGTCTCGTGCGATAAGTCGAACAATGACTGTAGCTAATGGCACTGTAGATAAGCCATTCCAATGTAATGTATGTGAAAGAAGATTTCGCCAATTAAGTACACTAACGAATCATGTTAAAATTCATACCGGTGAAAAGCCATATAAATGTTCAATATGCGATAAACATTTCCGACAGAGCAGTACACTTACAAATCACTTAAAAATACATACTGGTGAAAAACCATTCAATTGTACGTATTGTGGCAAACAGTTTCGTCAATTAAGTACATTGACGAATCATCTTAAAATACATACGGGCGAAAAGCCATTTGAATGTGTCGTTTGTAAAAAACAATTTCGTCAATCCAGCACACTTAATAATCACATAAAAATTCATGTAATGGATAAACTTTATATACCGTTTGAAATAAAGGCGGAAGAGGAAGGGTGA
- Protein Sequence
- MSRAISRTMTVANGTVDKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCSICDKHFRQSSTLTNHLKIHTGEKPFNCTYCGKQFRQLSTLTNHLKIHTGEKPFECVVCKKQFRQSSTLNNHIKIHVMDKLYIPFEIKAEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203877;
- 90% Identity
- iTF_01540912;
- 80% Identity
- iTF_01431503; iTF_01432528; iTF_01431354;