Tnob033347.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- Aef1
- Assembly
- GCA_963855945.1
- Location
- OY979696.1:61039690-61040097[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0057 90 5.1 0.1 22 52 9 39 4 40 0.86 2 4 6.1e-06 0.096 14.6 0.0 21 51 36 66 33 67 0.88 3 4 0.0019 30 6.6 0.0 21 51 64 94 61 95 0.88 4 4 0.0001 1.6 10.6 0.1 21 47 92 118 89 123 0.89
Sequence Information
- Coding Sequence
- ATGACTGTAGCTAATGGCACTGTAGATAAGCCATTCCAATGTAATGTATGTGAAAGAAGATTTCGCCAATTAAGTACACTAACGAATCATGTTAAAATTCATACCGGTGAAAAGCCATATAAATGTTCAATATGTGACAAACATTTCCGACAGAGCAGTACACTTACAAATCACTTAAAAATACATACTGGTGAGAAACCATTTAATTGTACGTATTGTGGCAAACAGTTTCGTCAGTTAAGTACATTGACGAATCATCTTAAAATACATACTGGCGAAAAGCCATTTGAATGTGTCGTttgtaaaaaacaatttcgtcAATCCAGCACACTTAATAATCACATAAAAATTCACGTAATGGACAAACTTTATATACCGTTTGAAATAAAAGCGGAAGAGGAAGGGTGA
- Protein Sequence
- MTVANGTVDKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCSICDKHFRQSSTLTNHLKIHTGEKPFNCTYCGKQFRQLSTLTNHLKIHTGEKPFECVVCKKQFRQSSTLNNHIKIHVMDKLYIPFEIKAEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203877;
- 90% Identity
- iTF_01540912;
- 80% Identity
- iTF_01432684;