Tuni044082.1
Basic Information
- Insect
- Thereva unica
- Gene Symbol
- -
- Assembly
- GCA_949987705.1
- Location
- OX465283.1:40742348-40743802[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.004 1e+02 5.2 0.2 17 46 199 227 195 233 0.80 2 9 0.017 4.3e+02 3.1 0.2 22 49 231 257 223 260 0.79 3 9 9.1e-05 2.3 10.4 0.5 23 45 259 281 252 288 0.84 4 9 0.22 5.6e+03 -0.4 0.1 21 44 285 308 281 313 0.86 5 9 0.0054 1.4e+02 4.7 0.2 21 45 313 337 307 345 0.88 6 9 0.007 1.8e+02 4.4 0.0 21 46 369 394 363 401 0.83 7 9 0.09 2.3e+03 0.8 0.1 21 43 397 419 392 424 0.83 8 9 0.00045 11 8.2 0.1 20 45 424 449 408 452 0.81 9 9 4.4e-08 0.0011 21.0 0.4 21 48 453 480 451 483 0.93
Sequence Information
- Coding Sequence
- ATGGCTGGGAAAATGCTTGAAATGAAAAACATCCTGCTAGCAGAGTATGCTGAGGAAGGATGTTCATTCTCGGACGGTGAGGACACTAAATCATCAATTATGCTAACAGATGAGATGATAAAAAAGGAGCCCGAGTTTATAGTGGAGGACGAAGATGAAGGGGAAAAAATTAGGAATTTTCTCAATAAAACCACATTGAATGATGAAGATCGGAAAAATTTGATCTGGCATAACTGTATTATATGCGAAGAAAGGTTCTTAAGCCTTGAGGAGCTGGGCGATCACGTGCAAGGCCAcataaaacgtgaaaaaactgAAGTGGAGGACCGAGTACTGAACCATCGCCAAGCACCGAAAACTAGTCATACAGGATTCACACGTGATGAGTTGTTCAGTGATTTTGTAAAGGTTAAAGTAAATTTAGATGGTGACCCTACTTACACGTGCAAGCTGTGTGGAAACAAgcattttacaaaattaatCGGGCTTCAGAATCACATGCGAATACACCAGAATCCTATTTATAAGGACAGAAATTGTCATATTTGCAAGAGGACATTTCTACGAAGGGACACTCTTCTAGTGCATCTAAGAACACACTCACAAGAACGACCTTATAAGTGCGATATCTGCCCAGCTACATTTGCTCATTCTAGTTCCTTAGTATCGCATAAGAGAATTCATTCTGGTGATAAGCCTTATTCATGTGATATCTGCAACCATCACTTTCGAGAATCTGGACAAATGTCGGCACATCGTaggacgcattttgataaaactTTAAAGTGTCCGCTGTGCAATCAGATGTATGCGTCTTCAAAGAATCTACGTGCCCATCTCCGAACGCATACAGGAGAACGTCCGTACAACTGCAAAAGATGCGATAAATCATTCCGTACATCCACTGCCCTTACAATGCATACTCGGGTTCATACTGGAGAGCGTCCCTATAAGTGTCCCAGATGTTCATTTGCAACAAAACAGCCAGGTAGCCTCAAGTCTCATCTTAGGACACACACGGGTGAACGTCCTTATCACTGTGACTTATGCGATCGGAAATATTCAGATAGAAAGCGACTAGTAACCCATTATCGAACCCATACAGGAGAACGACCCTACAAGTGTCCACATTGTGATTCAGCTTTCGTGCGAGGTGACAACCTTAAAATCCACATTAGAACTCACACCGGAGAGAAGCCCTTTCAGTGTCCAGAATGTCCGAAAAAATTCGCTCAGAGGACCACGCTCAAGACACATTCGAAAGTTCATACAGGAGAAAGACCATATCGGTGTCCGTATTGCACTATGACCTTCAAGCAATCGGGCACCTTAGTTACTCACATGCGAATTCATGATGATGAAAGACCTTTTGCGTGCCAATTATGTGATCGTTCGTACCGGCAAAGCGGTAATCTGCGAAGGCACATAGAAGTCGATCACAACAAAGTCAAGTAG
- Protein Sequence
- MAGKMLEMKNILLAEYAEEGCSFSDGEDTKSSIMLTDEMIKKEPEFIVEDEDEGEKIRNFLNKTTLNDEDRKNLIWHNCIICEERFLSLEELGDHVQGHIKREKTEVEDRVLNHRQAPKTSHTGFTRDELFSDFVKVKVNLDGDPTYTCKLCGNKHFTKLIGLQNHMRIHQNPIYKDRNCHICKRTFLRRDTLLVHLRTHSQERPYKCDICPATFAHSSSLVSHKRIHSGDKPYSCDICNHHFRESGQMSAHRRTHFDKTLKCPLCNQMYASSKNLRAHLRTHTGERPYNCKRCDKSFRTSTALTMHTRVHTGERPYKCPRCSFATKQPGSLKSHLRTHTGERPYHCDLCDRKYSDRKRLVTHYRTHTGERPYKCPHCDSAFVRGDNLKIHIRTHTGEKPFQCPECPKKFAQRTTLKTHSKVHTGERPYRCPYCTMTFKQSGTLVTHMRIHDDERPFACQLCDRSYRQSGNLRRHIEVDHNKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01431257;
- 90% Identity
- iTF_01431502; iTF_01432431; iTF_01431257;
- 80% Identity
- iTF_01432431;