Tnob028653.1
Basic Information
- Insect
- Thereva nobilitata
- Gene Symbol
- -
- Assembly
- GCA_963855945.1
- Location
- OY979695.1:140168531-140169985[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0055 86 5.1 0.3 17 46 199 227 195 233 0.80 2 9 0.024 3.8e+02 3.0 0.1 22 49 231 257 225 260 0.79 3 9 0.0001 1.6 10.6 0.4 21 45 257 281 247 288 0.84 4 9 0.31 4.8e+03 -0.5 0.1 21 44 285 308 281 312 0.86 5 9 0.021 3.4e+02 3.2 0.3 21 45 313 337 307 345 0.87 6 9 0.0091 1.4e+02 4.4 0.0 21 46 369 394 362 401 0.83 7 9 0.12 1.9e+03 0.8 0.1 21 43 397 419 392 424 0.83 8 9 0.0006 9.4 8.2 0.1 20 45 424 449 408 452 0.81 9 9 5.6e-08 0.00088 21.1 0.4 21 48 453 480 450 483 0.93
Sequence Information
- Coding Sequence
- ATGGCTGGGAAAATGCTTGAAATGAAAAACATCCTGCTGGCAGAATATGCTGAGGACGGATGTACTTTCTCGGACGGCGAGGACACAAAATCATCAATAATCCTAACAGATGAAATGATAAAAAAGGAGCCTGAATTTATAGTGGAGGACGAAATTGAAGGcgaaaaaattaagaattttctcaataaaacaacattgaATGATGAAGATCGGAAAAATTTGACCTGGCATAACTGTATTATATGCGAAGAAAGATTTTTAAGCCTTGAAGAACTAGGTGATCACGTGCAGGGTCAcataaaaagggaaaaaactGAAGTAGAGGACAGAGTACTAAATCATCGTCAAGCCCCAAAAACTAGTCATACAGGATTCACACGTGATGAATTGTTCAGTGATTTTGTAAAAGTTAAAGTTAATTTAGATGGTGATCCCACTTATACGTGCAAACTATGTGGAAACAagcattttacaaaattaatcgGGCTTCAGAATCACATGAGAATACACCAGAATCCTATTTATAAGGACAGAAATTGTCATATTTGCAAAAGGACATTTTTACGAAGGGACACCCTTCTAGTGCATCTAAGAACACATTCACAAGAACGACCTTATAAATGCGATATCTGCCCAGCTACGTTTGCTCATTCTAGTTCCTTAGTATCGCATAAAAGAATTCATTCTGGTGATAAGCCTTATTCATGTGATATTTGCAACCATCACTTTCGCGAATCTGGACAAATGTCGGCACATCGTAGAACGCATTTTGATAAAACATTAAAGTGTCCATTGTGTAATCAGCTGTACGCGTCTTCAAAAAATCTACGTGCCCATCTAAGGACTCATACAGGAGAACGTCCTTACAATTGCAAAAGATGCGATAAATCATTCCGAACATCCACTGCTCTTACTATGCATACTCGGGTTCATACTGGAGAACGTCCGTATAAGTGTCCCAGATGTTCATTTGCAACAAAACAACCAGGTAGCCTCAAGTCTCATATTAGGACGCATACGGGTGAACGTCCTTATCACTGTGACTTATGCGATCGGAAATATTCAGATAGAAAGCGGCTTGTAACGCATTATCGGACCCATACAGGAGAGCGGCCTTACAAGTGTCCACATTGTGATTCAGCTTTTGTGCGAGGTGACAACCTTAAAATTCATATTAGAACACACACGGGAGAGAAGCCCTTTCAGTGTCCAGAGTGTCCAAAAAAATTTGCTCAGAGGACCACGCTCAAGACACATTCTAAAGTTCATACAGGAGAAAGACCATATCGGTGTCCATATTGCACTATGACGTTCAAGCAGTCGGGCACCTTAGTTACTCATATGCGGATTCATGATGATGAAAGACCTTTTGCGTGCCAATTATGTGATCGTTCTTACAGGCAAAGCGGTAATCTGCGAAGGCATATAGAAGTCGATCACAACAAAGTCAAGTAG
- Protein Sequence
- MAGKMLEMKNILLAEYAEDGCTFSDGEDTKSSIILTDEMIKKEPEFIVEDEIEGEKIKNFLNKTTLNDEDRKNLTWHNCIICEERFLSLEELGDHVQGHIKREKTEVEDRVLNHRQAPKTSHTGFTRDELFSDFVKVKVNLDGDPTYTCKLCGNKHFTKLIGLQNHMRIHQNPIYKDRNCHICKRTFLRRDTLLVHLRTHSQERPYKCDICPATFAHSSSLVSHKRIHSGDKPYSCDICNHHFRESGQMSAHRRTHFDKTLKCPLCNQLYASSKNLRAHLRTHTGERPYNCKRCDKSFRTSTALTMHTRVHTGERPYKCPRCSFATKQPGSLKSHIRTHTGERPYHCDLCDRKYSDRKRLVTHYRTHTGERPYKCPHCDSAFVRGDNLKIHIRTHTGEKPFQCPECPKKFAQRTTLKTHSKVHTGERPYRCPYCTMTFKQSGTLVTHMRIHDDERPFACQLCDRSYRQSGNLRRHIEVDHNKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01431257;
- 90% Identity
- iTF_01432683;
- 80% Identity
- iTF_01431257;